View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_low_53 (Length: 215)
Name: NF3825_low_53
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 38218381 - 38218173
Alignment:
| Q |
1 |
tagttgagtcaaagatgatctatgtttagactttagataccttgcattattatcaattatgggcgacaattacaactaactattttggttaaataagaga |
100 |
Q |
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| T |
38218381 |
tagttgagtcaaagatgatctatgtttagactttagataccttgcattattatcaattatgggcgacaattacaactaactattttggttaaataagaga |
38218282 |
T |
|
| Q |
101 |
agagaatatacaggtgaagacaatagaagagaaagacaacaatgcgcgcgattccagtttccacgcaagctttcctacttcctcaaccacattcctccct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38218281 |
agagaatatacaggtgaagacaatagaagagaaagacaacaatgcgcgcgattccagtttccacgcaagctttcctacttcctcaaccacattcctccct |
38218182 |
T |
|
| Q |
201 |
ttgcttctc |
209 |
Q |
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|| |||||| |
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| T |
38218181 |
tttcttctc |
38218173 |
T |
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