View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_low_7 (Length: 439)
Name: NF3825_low_7
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 64 - 429
Target Start/End: Complemental strand, 44655206 - 44654851
Alignment:
| Q |
64 |
catgtttggtatcacttgatttgccgaaatcatgttgaggtatattacatctcagttttcctacnnnnnnncaccaaagcaaatttaattcatatcatta |
163 |
Q |
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| T |
44655206 |
catgtttggtatgacttgatttgccgaaatcatgttgaggtat--tacatctcagttttcctacttttttt-accaaagcaaatttaattcatatcatta |
44655110 |
T |
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| Q |
164 |
attacttaaaatagagtcaatacaaagaggacttacgtaatctnnnnnnnnnnnnnnnctaatgtaagacaccatctttattcgagcaaccaacatactg |
263 |
Q |
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||||||||||||||||||||| || ||| ||| |||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44655109 |
----cttaaaatagagtcaatacaaggaagacctacttaatctaaaaaaaaaaaa---ctactgtaagacaccatctttattcgagcaaccaacatactg |
44655017 |
T |
|
| Q |
264 |
caatcctctacaccaccctgaaaacaaatcttgttttctcaacaactaagtagatcacacaacactgatccaaacccaataactcaactttcttcaatgt |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44655016 |
caatcctctacaccaccctgaaaacaaatcttgttttctcaacaactaagtagatcacacaacactgatccaaacccaataactcaactttcttcaatgt |
44654917 |
T |
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| Q |
364 |
catcctttttgaaaatttccatgttacagaaaatattgaactccattcttgaaaatatgctctctg |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44654916 |
catcctttttgaaaatttccatgttacagaaaatattgaactccattcttgaaaatatgctctctg |
44654851 |
T |
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