View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3825_low_9 (Length: 434)
Name: NF3825_low_9
Description: NF3825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3825_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 10 - 420
Target Start/End: Complemental strand, 54496710 - 54496300
Alignment:
| Q |
10 |
gcataggcattgtaattagaggtgggagaactaggtcatgcttgttttggacaacgacagccagctttaatcccatcttgcaatgacgctttgttccact |
109 |
Q |
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| T |
54496710 |
gcataggcattgtaattagaggtgggagaactaggtcatgcttgttttggacaacgacagccagctttaatcccatcttgcaatgacgctttgttccact |
54496611 |
T |
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| Q |
110 |
tatgaaatgatatactcctattttatcaagcacaaccttagtgttgccgtcgtggtgctccacatgttctccatttgtatgacacattatataatcatgc |
209 |
Q |
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| T |
54496610 |
tatgaaatgatatactcctattttatcaagcacaaccttagtgttgccgtcgtggtgctccacatgttctccatttgtatgacacattatataatcatgc |
54496511 |
T |
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| Q |
210 |
tcattcacttcgtgcactgattctgtttcgttatcgtactcaaacactgcatgtatacatgcataaatacgagaaacaaattcatcattttttatatgta |
309 |
Q |
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| T |
54496510 |
tcattcacttcgtgcactgattctgtttcgttatcgtactcaaacactgcatgtatacatgcataaatacgagaaacaaattcatcattttttatatgta |
54496411 |
T |
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| Q |
310 |
gttaagaagtaattaattaagaggaatgatatatggcttacgaatggtatcaccgactgtgaattcgtgagcagaggcccagcgggcgaatgcacgtcgt |
409 |
Q |
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| T |
54496410 |
gttaagaagtaattaattaagaggaatgctatatggcttacggatggtatcaccgactgtgaattcgtgagcagaggcccagcgggcgaatgcacgtcgt |
54496311 |
T |
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| Q |
410 |
gatggaagagg |
420 |
Q |
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| T |
54496310 |
gatggaagagg |
54496300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 60 - 181
Target Start/End: Complemental strand, 54504760 - 54504639
Alignment:
| Q |
60 |
acaacgacagccagctttaatcccatcttgcaatgacgctttgttccacttatgaaatgatatactcctattttatcaagcacaaccttagtgttgccgt |
159 |
Q |
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| T |
54504760 |
acaacaacagctagctttaaacccaacctgcaatgacgcttttttccacttatgaaatgatgtattcctgttttcttaagcaccaccattgtattgccgt |
54504661 |
T |
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| Q |
160 |
cgtggtgctccacatgttctcc |
181 |
Q |
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||| ||| || ||||| ||||| |
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| T |
54504660 |
cgtagtggtctacatgctctcc |
54504639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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