View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3826_high_1 (Length: 514)
Name: NF3826_high_1
Description: NF3826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3826_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 26 - 495
Target Start/End: Complemental strand, 31206676 - 31206205
Alignment:
| Q |
26 |
tagtttataatttttcttagaattttacctcttttattatacttgaaaaagttaactattagttcaaacatgttgattgataacaaatcatgttaagttc |
125 |
Q |
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| T |
31206676 |
tagtttataatttttcttagaattttacctcttttattttacttgaaaaagttaactattagttcaaacatgttgattgataacaaatcatgttaagttc |
31206577 |
T |
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| Q |
126 |
aagaacacacctcacatcttgcaaaagtaacatatggttggcaaacatcgtaagacatacg----gaacacatatcttgaacattacaaaccgttttatt |
221 |
Q |
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| T |
31206576 |
aagaacacacctcacatcttgcaaaagtaactcatggttggcaaacatcgtaagacatacttactgaacacatatcttgaacattacaaaccgttttgtt |
31206477 |
T |
|
| Q |
222 |
tataaggtgaacaactccaccttcatttagccttagagtctcaacttgttgttaaaggagcttccagagtccatgacttaacttttcaccaatagtgcct |
321 |
Q |
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| T |
31206476 |
ttcaaggtgaacaactccaccttcatctagccttagagtctcaacttgttgttaaag-agcttccagagtccatgacttaacttttcaccactagtgcct |
31206378 |
T |
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| Q |
322 |
ctgcttcctcgtaattttttctgcgaggcaacttgcatgaaatcatcatttcctttcacctcattacaatccatcttgaaatgactcatcatataacaat |
421 |
Q |
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| T |
31206377 |
ctgcttcctcgtaattttt-ctgtgaggcaacttgcatgaaatcatcatttcctttcacctcattacaatccatcttgaaatgactcatcatataacaat |
31206279 |
T |
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| Q |
422 |
tgaagcatttcaatgtgtgactagaatatgagtttagtttagccgcccattttcctttactttcacatcttcct |
495 |
Q |
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| T |
31206278 |
tgaagcatttcaatgtgtgactagaatatgattttagtttagccacccattttcctttactttcacatcttcct |
31206205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 149
Target Start/End: Original strand, 2239196 - 2239226
Alignment:
| Q |
119 |
taagttcaagaacacacctcacatcttgcaa |
149 |
Q |
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| T |
2239196 |
taagttcaagaacacacctcacatcttgcaa |
2239226 |
T |
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