View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3826_high_11 (Length: 240)
Name: NF3826_high_11
Description: NF3826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3826_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 24988484 - 24988706
Alignment:
| Q |
1 |
tattattttaaaaactgttgtcaatatagtcaaattcaattcctcnnnnnnnnnnntatagtcaaattcaaattacctacgtttaataatggatagggtt |
100 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24988484 |
tattattttaaaaactattgtcaatataatcaaattcaattcctaaaaaaaaaaaatatagtcaaattcaaattacctacgtttaataatggatagggtt |
24988583 |
T |
|
| Q |
101 |
gacacataaactctttaaaaggaaggtttgacacataaactcttacaaggaaggtttgacaaataaaccttgctcacggatatgttcaaatcaaataaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24988584 |
gacacataaactctttaaaaggaaggtttgacacataaactcttacaaggaaggtttgacaaataaaccttgctcacggatatattcaaatcaaataaaa |
24988683 |
T |
|
| Q |
201 |
tctaataatttttaatttgataa |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
24988684 |
tctaataatttttaatttgataa |
24988706 |
T |
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