View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3826_high_3 (Length: 369)
Name: NF3826_high_3
Description: NF3826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3826_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 360
Target Start/End: Complemental strand, 2350399 - 2350052
Alignment:
| Q |
13 |
cagaagcaaggtttcgacggagggcacgccatgttgcaccataaaaagcggagctgatgttgtgttggttgctggagatgattttggcggtgggaagagc |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2350399 |
cagaagcaaggtttcgacggagggcacgccatgttgcaccataaaaagcggagctgatgttgtgttggttgctggagatgattttggcggtgggaagagc |
2350300 |
T |
|
| Q |
113 |
tctagggcgatcagagaagatggctgagttttgaacgagagcgtggtgggcgagagtatggtcggagatgaaaatggaaggtcggtaactgattttgaga |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2350299 |
tctagggcgatcagagaagatggctgagttttgaacgagagcgtggtgggcgagagtatggtcggagatgaaaatggaaggtcggtaactgattttgaga |
2350200 |
T |
|
| Q |
213 |
gtgatgataggaccatatttggtgtggagggttttgataaaaggttcgagttgggacgatgattttcggagccataggatacttgtgatgatggggatat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2350199 |
gtgatgataggaccatatttggtgtggagggttttgataaaaggttcgagttgggacgatgattttcggagccataggatacttgtgataatggggatat |
2350100 |
T |
|
| Q |
313 |
gcggtggaccnnnnnnnagggttgtggtggttttgttggtggtggtga |
360 |
Q |
| |
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|||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
2350099 |
gcggtggaccgggagggagggttgcggtggttttgttggtggtggtga |
2350052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 15 - 284
Target Start/End: Complemental strand, 2302827 - 2302558
Alignment:
| Q |
15 |
gaagcaaggtttcgacggagggcacgccatgttgcaccataaaaagcggagctgatgttgtgttggttgctggagatgattttggcggtgggaagagctc |
114 |
Q |
| |
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||||||||||| |||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| | ||||||| || |||| |||| |
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| T |
2302827 |
gaagcaaggttacgacggagggtacgccatgttgggccataaaaaccggagctgatgttgtgttggttgctggacaacattttggaagtaggaaaagctt |
2302728 |
T |
|
| Q |
115 |
tagggcgatcagagaagatggctgagttttgaacgagagcgtggtgggcgagagtatggtcggagatgaaaatggaaggtcggtaactgattttgagagt |
214 |
Q |
| |
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|||||||||||||| ||||| ||||||||||||||||| | |||||||| |||| |||||| |||||||||||||||||| ||| ||| | |||||| |
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| T |
2302727 |
tagggcgatcagagtagatgtctgagttttgaacgagaacatggtgggccagagcatggtcatcgatgaaaatggaaggtcgagaaccgatgtggagagt |
2302628 |
T |
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| Q |
215 |
gatgataggaccatatttggtgtggagggttttgataaaaggttcgagttgggacgatgattttcggagc |
284 |
Q |
| |
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|||||||||||||| ||||| ||||| ||||||| ||||||||| |||||||| |||| |||||||||| |
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| T |
2302627 |
gatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggaggatggttttcggagc |
2302558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 2293208 - 2292913
Alignment:
| Q |
15 |
gaagcaaggtttcgacggagggcacgccatgttgcaccataaaaagcggagctgatgttgtgttggttgctggagatgattttggcggtgggaagagctc |
114 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||||| |||||| |||||| | |||||||||||||||||||||| | ||||||| || ||||||||| |
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| T |
2293208 |
gaagcaaggttacgacgaagggtacgccatgttgggccataataagcggtgttgatgttgtgttggttgctggacaacattttggaagtaggaagagctg |
2293109 |
T |
|
| Q |
115 |
tagggcgatcagagaagatggctgagttttgaacgagagcgtggtgggcgagagtatggtcggagatgaaaatggaaggtcggtaactgattttgagagt |
214 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| | |||||||| |||||||||||| ||||||||||||||||| ||| ||| | || ||| |
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|
| T |
2293108 |
tagggcgatcagagaagatggatgagttttgaacgagaacatggtgggccagagtatggtcgttaatgaaaatggaaggtcgagaaccgatatggacagt |
2293009 |
T |
|
| Q |
215 |
gatgataggaccatatttggtgtggagggttttgataaaaggttcgagttgggacgatgattttcggagccataggatacttgtgatgatggggat |
310 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||| ||||||||| |||||||| ||||||| ||||| || ||| |||||||||||||||| |
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| T |
2293008 |
gatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatggggat |
2292913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 2320528 - 2320233
Alignment:
| Q |
15 |
gaagcaaggtttcgacggagggcacgccatgttgcaccataaaaagcggagctgatgttgtgttggttgctggagatgattttggcggtgggaagagctc |
114 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| ||| || ||||||||| |
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|
| T |
2320528 |
gaagcaaggttacgacggagggtacgccatgttgggccataaaaagcggagctgatgttgtgttggttgctggacaacattatggaagtaggaagagcta |
2320429 |
T |
|
| Q |
115 |
tagggcgatcagagaagatggctgagttttgaacgagagcgtggtgggcgagagtatggtcggagatgaaaatggaaggtcggtaactgattttgagagt |
214 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| | ||||| || |||| ||||||| |||||||||||||||||| ||| ||| | || ||| |
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|
| T |
2320428 |
cggggcgatccgagaagatggctgagttttgaacgagaacatggtgagccagagcatggtcgttgatgaaaatggaaggtcgagaaccgatatggacagt |
2320329 |
T |
|
| Q |
215 |
gatgataggaccatatttggtgtggagggttttgataaaaggttcgagttgggacgatgattttcggagccataggatacttgtgatgatggggat |
310 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||| ||||||||| |||||||| ||||||| ||||| || ||| |||||||||||||||| |
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|
| T |
2320328 |
gatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatggggat |
2320233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 21 - 357
Target Start/End: Complemental strand, 2330091 - 2329755
Alignment:
| Q |
21 |
aggtttcgacggagggcacgccatgttgcaccataaaaagcggagctgatgttgtgttggttgctggagatgattttggcggtgggaagagctctagggc |
120 |
Q |
| |
|
||||| |||||||| | ||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||| |||| |||||||| ||| |||| | |
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|
| T |
2330091 |
aggttacgacggagagtacgccatgttggtccataaaaagcggagctgatattgtgctggttgctggacatgagtttgttagtgggaagtgctttaggac |
2329992 |
T |
|
| Q |
121 |
gatcagagaagatggctgagttttgaacgagagcgtggtgggcgagagtatggtcggagatgaaaatggaaggtcggtaactgattttgagagtgatgat |
220 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||| |||| | |||||| |||||||||||||||||| ||| ||| || ||| ||||||| |
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|
| T |
2329991 |
gatcagagaagacggaggagttttgaacgagagcgtggtgggccagagcacggtcggcgatgaaaatggaaggtcgagaaccgatattaagattgatgat |
2329892 |
T |
|
| Q |
221 |
aggaccatatttggtgtggagggttttgataaaaggttcgagttgggacgatgattttcggagccataggatacttgtgatgatggggatatgcggtgga |
320 |
Q |
| |
|
|||||||| ||||| || || ||| ||| ||||||||| || |||| |||||||||| |||||| |||| ||||||||||| || ||||| |||||| |
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|
| T |
2329891 |
aggaccatgtttggcatgaagagttctgagaaaaggttcaagctgggcgaatgattttcgaagccattggatgcttgtgatgattggtatatgtggtgga |
2329792 |
T |
|
| Q |
321 |
ccnnnnnnnagggttgtggtggttttgttggtggtgg |
357 |
Q |
| |
|
|| ||||||| ||||||||| |||||||||| |
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| T |
2329791 |
ccaggggggagggttgcggtggttttcttggtggtgg |
2329755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 2309538 - 2309244
Alignment:
| Q |
16 |
aagcaaggtttcgacggagggcacgccatgttgcaccataaaaagcggagctgatgttgtgttggttgctggagatgattttggcggtgggaagagctct |
115 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | ||||||| || ||||||||| | |
|
|
| T |
2309538 |
aagcaaggttacgacggagggtacgccatgttgggccataaaaagcggtgttgatgttgtgttggttgctggacaacattttggaagtaggaagagctgt |
2309439 |
T |
|
| Q |
116 |
agggcgatcagagaagatggctgagttttgaacgagagcgtggtgggcgagagtatggtcggagatgaaaatggaaggtcggtaactgattttgagagtg |
215 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| | ||||| || |||| ||||||| |||||||||||||||| | ||| ||| | || | || |
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|
| T |
2309438 |
agggcgatcagagattatggctgagttttgaacgagaacatggtgagccagagcatggtcgttgatgaaaatggaaggttgagaaccgatatggacaatg |
2309339 |
T |
|
| Q |
216 |
atgataggaccatatttggtgtggagggttttgataaaaggttcgagttgggacgatgattttcggagccataggatacttgtgatgatggggat |
310 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||||| ||||||||| |||||||| ||||||| ||||| || ||| |||||||||||||||| |
|
|
| T |
2309338 |
atgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatggggat |
2309244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 21 - 319
Target Start/End: Complemental strand, 2326376 - 2326078
Alignment:
| Q |
21 |
aggtttcgacggagggcacgccatgttgcaccataaaaagcggagctgatgttgtgttggttgctggagatgattttggcggtgggaagagctctagggc |
120 |
Q |
| |
|
||||| |||||||||| || |||||||| ||||||||||||| |||||||||||| |||||||| || |||| |||| ||||||| ||| |||| | |
|
|
| T |
2326376 |
aggttacgacggagggtacaccatgttgggccataaaaagcggcgctgatgttgtgctggttgctagatatgagtttgtgactgggaagtgctttaggac |
2326277 |
T |
|
| Q |
121 |
gatcagagaagatggctgagttttgaacgagagcgtggtgggcgagagtatggtcggagatgaaaatggaaggtcggtaactgattttgagagtgatgat |
220 |
Q |
| |
|
|||| ||||||| | ||| ||||||||||| ||||||||||| |||| | ||||||||||| |||||||||||| | | | ||| || ||| ||||||| |
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|
| T |
2326276 |
gatcggagaagagagatgaattttgaacgagggcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgat |
2326177 |
T |
|
| Q |
221 |
aggaccatatttggtgtggagggttttgataaaaggttcgagttgggacgatgattttcggagccataggatacttgtgatgatggggatatgcggtgg |
319 |
Q |
| |
|
|||||||| ||||| ||||| ||||||| ||||||||| |||||||| ||||||||||||||||| | || ||||||||||||||||| || ||||| |
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|
| T |
2326176 |
aggaccatgtttggcatggagagttttgagaaaaggttcaagttgggaaaatgattttcggagccattgtatgcttgtgatgatggggatgtgtggtgg |
2326078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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