View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3826_high_5 (Length: 293)
Name: NF3826_high_5
Description: NF3826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3826_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 13140064 - 13139791
Alignment:
| Q |
1 |
agatcaagacaatttaaatttcaagtttgatattttaaattaaaaagattacataaatcaaaatattcattgaaatttagccgtgtaatgttaattagac |
100 |
Q |
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| T |
13140064 |
agatcaagacaatttaaattttaagtttgatattttaaattaaaaagattatataaatcaaaatcttcattgaaatttagccgtgtaatgttaattagac |
13139965 |
T |
|
| Q |
101 |
aatttgaatgtggctgagtgcatatagtcacactaaacacattcaagatccctccacaaagagtatcgcataatgcaaaatgtatgctctcgaaccacaa |
200 |
Q |
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| T |
13139964 |
aatttgaatgtggctgagtgcatatagtcacactaaacacattcaagatccctccacaaagagtatcgcataatgcaaaatgtatgctctcgaaccacaa |
13139865 |
T |
|
| Q |
201 |
gtacgatttttgtgacctgttttgtattctacacatcaaacacctgtgtgatcattttcattctatctgctcat |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13139864 |
gtacgatttttgtgacctgttttgtattctacacatcaaacacctgtgtgatcattttcattctatctgctcat |
13139791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 5521726 - 5521754
Alignment:
| Q |
16 |
aaatttcaagtttgatattttaaattaaa |
44 |
Q |
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| T |
5521726 |
aaatttcaagtttgatattttaaattaaa |
5521754 |
T |
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