View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3826_high_8 (Length: 252)
Name: NF3826_high_8
Description: NF3826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3826_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 31206894 - 31207126
Alignment:
| Q |
1 |
acaaaatgattatataaatatcatttctcaatgagatataagccactaaaaataagctataaatttgtgtgagaaaaaattgctatcaaacaaatctttt |
100 |
Q |
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| T |
31206894 |
acaaaatgattgtacaaatatcatttctgaataagatataagctagtaaaaataagttataaatttgtgtgagaaaaaattgctatcaaacaaatctttt |
31206993 |
T |
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| Q |
101 |
tctatcgtataaacttaaaagctaccagttctaaatctgtcttttgccaaactccccatgaatgcaaatccaacttctccaagtttgtccccacttaggg |
200 |
Q |
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| T |
31206994 |
tctatcgtataaact--------acaagttctaaatctgtcttt-gccaaactccccatgaatgcaaatccaacttctccaagtttgtccccacttaggg |
31207084 |
T |
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| Q |
201 |
aaataagtcaaacaaacatcacaaaagccaattcgtcctatg |
242 |
Q |
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| T |
31207085 |
aaataagtcaaacaaacatcacaaaagccaattcgtcctatg |
31207126 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 13252565 - 13252527
Alignment:
| Q |
1 |
acaaaatgattatataaatatcatttctcaatgagatat |
39 |
Q |
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| T |
13252565 |
acaaaatgattatataaatatcatttctcagttagatat |
13252527 |
T |
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