View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3826_high_9 (Length: 248)
Name: NF3826_high_9
Description: NF3826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3826_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 42413418 - 42413653
Alignment:
| Q |
1 |
acatggatcaaatgtgaagtcccaactattgatataagaagatggagaaattgaattaggatcaatgccatgcactatttcttgaagggagtgaatgtca |
100 |
Q |
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| T |
42413418 |
acatggatcaactgtgaagtcccaactattgatataagaagatggagaaattgaattaggatcaatgccatgcactatttcttgaagggagtgaatgtca |
42413517 |
T |
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| Q |
101 |
ttttcatgagttaatgagtggatttgtgatagagtcattgttatggttaaaagggaataaagaggtgagaagaatgagaatttagtaggtgnnnnnnnag |
200 |
Q |
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| T |
42413518 |
ttttcatgagttaatgagtggatttgtgatagagtcattgttatggttaaaagggaataaagaggcgagaagaatgagaatttagtaggtgtttttttag |
42413617 |
T |
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| Q |
201 |
ccattgtggaaattggttttggttttaatttgtgat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
42413618 |
ccattgtggaaattggttttggttttaatttgtgat |
42413653 |
T |
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