View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3826_low_2 (Length: 484)
Name: NF3826_low_2
Description: NF3826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3826_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 130 - 457
Target Start/End: Original strand, 44670674 - 44671001
Alignment:
| Q |
130 |
ggtagttattttattttttaaaaagtcattattttgaggnnnnnnntataacaaactgaaatttgatggcataaaacatcctattccacatatctaattc |
229 |
Q |
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| T |
44670674 |
ggtagttattttattttttaaaaagtcattattttgaggaaaaaaatataacaaactgaaatttgatggcataaaacatcctattccacatatctaattc |
44670773 |
T |
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| Q |
230 |
ggtgattaaaaagattttgctacgacatactactaagaatgaattggcaaacttgattcaaattcaattatataaagccaaaaataggattggtttgtca |
329 |
Q |
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| T |
44670774 |
ggtgattaaaaagattttgctacgacatactactaagaatgaattggcaaacttgattcaaattcaataatataaagccaaaaataggattggtttgtca |
44670873 |
T |
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| Q |
330 |
acgtgtaagaatacgtcaacgaattatgatgtccgttgaatcattttacaattatggaatttatgcaacatgccgttgaacagttgcaaattatattggt |
429 |
Q |
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| T |
44670874 |
acgtgtaagaatacgtcaacgaattatgatgtccgttgaatcattttacaattatggaatttatgcaacatgccgttgaacagttgcaaattatattggt |
44670973 |
T |
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| Q |
430 |
taatcacttttatgggtgttcctaatct |
457 |
Q |
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| T |
44670974 |
taatcacttttatgggtgttcctaatct |
44671001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 44670132 - 44670252
Alignment:
| Q |
1 |
aggacatcattttttaaacagactctctattatgctccccttatttgtaatctcttgtaaatttggacgatgttggtgttatttccagcttttgagttaa |
100 |
Q |
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| T |
44670132 |
aggacatcattttttaaacagactctctattatgctccccttatttgtaatctcttgaaaatttggacgatgttggtgttatttccagcttttgagttaa |
44670231 |
T |
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| Q |
101 |
taaagttggcaccttccgtat |
121 |
Q |
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| T |
44670232 |
taaagttggcaccttccgtat |
44670252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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