View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3826_low_6 (Length: 267)
Name: NF3826_low_6
Description: NF3826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3826_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 8697829 - 8698067
Alignment:
| Q |
20 |
atagtaaaatctataacagtttgcaaataagataaaattcataccattttcattagagaaaaattcagcaggtgaactcttttgcctaataagattggag |
119 |
Q |
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| T |
8697829 |
atagtaaaatctataacagtttgcaaataagataaaattcataccattttcattagagaaaaattcagcaggtgaactcttttgcctaataagattggag |
8697928 |
T |
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| Q |
120 |
caattcctaacaccaattttagattgattagaatcatccgattccatagtgttaactccatcaaaagagccataaaaaccattaccagaaccatttgaaa |
219 |
Q |
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| T |
8697929 |
caattcctaacaccaattttagattgattagaatcatctgattccatagtgttaactccaccaaaagagccataaaaaccattaccagaaccatttgaaa |
8698028 |
T |
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| Q |
220 |
agccttggtaagtcaactcagatccaccataagaataat |
258 |
Q |
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||||||||||| |||||||||||||||||||||| |||| |
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| T |
8698029 |
agccttggtaaatcaactcagatccaccataagagtaat |
8698067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 9049716 - 9049954
Alignment:
| Q |
20 |
atagtaaaatctataacagtttgcaaataagataaaattcataccattttcattagagaaaaattcagcaggtgaactcttttgcctaataagattggag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9049716 |
atagtaaaatctataacagtttgcaaataagataaaattcataccattttcattagagaaaaattcagcaggtgaactcttttgcctaataagattggag |
9049815 |
T |
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| Q |
120 |
caattcctaacaccaattttagattgattagaatcatccgattccatagtgttaactccatcaaaagagccataaaaaccattaccagaaccatttgaaa |
219 |
Q |
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| T |
9049816 |
caattcctaacaccaattttagattgattagaatcatctgattccatagtgttaactccaccaaaagagccataaaaaccattaccagaaccatttgaaa |
9049915 |
T |
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| Q |
220 |
agccttggtaagtcaactcagatccaccataagaataat |
258 |
Q |
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||||||||||| |||||||||||||||||||||| |||| |
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| T |
9049916 |
agccttggtaaatcaactcagatccaccataagagtaat |
9049954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 13411339 - 13411388
Alignment:
| Q |
75 |
gagaaaaattcagcaggtgaactcttttgcctaataagattggagcaatt |
124 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
13411339 |
gagaaaaactcagcaggagaactcttttgcctaataagattggagcaatt |
13411388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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