View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3827_high_14 (Length: 303)
Name: NF3827_high_14
Description: NF3827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3827_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 149 - 287
Target Start/End: Complemental strand, 39403659 - 39403521
Alignment:
| Q |
149 |
caactatttgctcaagtttgtggacatgttttagaacattcgtaacaaacacaaattcaaaccaattgccaacacaaccttcaaattcaattacttttag |
248 |
Q |
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||||||||||||| ||||| ||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39403659 |
caactatttgctcgagtttatgggcatattttagaacattcgtaacaaactcaatttcaaaccaattgccaacacaaccttcaaattcaataacttttag |
39403560 |
T |
|
| Q |
249 |
ctcatcatgagagaatccttcaatatccctactatcttt |
287 |
Q |
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| T |
39403559 |
ctcatcatgagagaatccttcaatatccctactatcttt |
39403521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 39403768 - 39403721
Alignment:
| Q |
77 |
aaacacataattatactaacagaagtttttctcgtcctactacttcat |
124 |
Q |
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| T |
39403768 |
aaacacataattatactaacacaaggttttcccgtcctactacttcat |
39403721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 149 - 288
Target Start/End: Original strand, 48106950 - 48107089
Alignment:
| Q |
149 |
caactatttgctcaagtttgtggacatgttttagaacattcgtaacaaacacaaattcaaaccaattgccaacacaaccttcaaattcaattacttttag |
248 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||| ||||||| ||| |||| |||||||||||||||| ||| | |||||||| ||||||| |
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| T |
48106950 |
caactatttgctcaagtttgtgggcatattttagaacattcataacaaattcaatttcataccaattgccaacacagcctcctaattcaataacttttac |
48107049 |
T |
|
| Q |
249 |
ctcatcatgagagaatccttcaatatccctactatctttt |
288 |
Q |
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|| |||||||||||| ||||| |||||| |||||||| |
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| T |
48107050 |
ttcgtcatgagagaatgtttcaacatccctgatatctttt |
48107089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 264
Target Start/End: Complemental strand, 47929519 - 47929405
Alignment:
| Q |
150 |
aactatttgctcaagtttgtggacatgttttagaacattcgtaacaaacacaaattcaaaccaattgccaacacaaccttcaaattcaattacttttagc |
249 |
Q |
| |
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|||||||| |||||||||||| ||| ||||| ||||||| |||||||| ||| ||||||||||||||||||||| ||| |||||||||| ||||||| | |
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| T |
47929519 |
aactattttctcaagtttgtgtgcatattttataacattcataacaaactcaatttcaaaccaattgccaacacatcctccaaattcaataacttttacc |
47929420 |
T |
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| Q |
250 |
tcatcatgagagaat |
264 |
Q |
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| T |
47929419 |
tcgttgtgagagaat |
47929405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 288
Target Start/End: Original strand, 47050916 - 47051053
Alignment:
| Q |
151 |
actatttgctcaagtttgtggacatgttttagaacattcgtaacaaacacaaattcaaaccaattgccaacacaaccttcaaattcaattacttttagct |
250 |
Q |
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|||||||||||||| |||||| || ||||||||||||| |||||||| ||| |||| |||||||||||||||||||| |||||||| || ||| | |
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| T |
47050916 |
actatttgctcaagcttgtgggcacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataacccttatat |
47051015 |
T |
|
| Q |
251 |
catcatgagagaatccttcaatatccctactatctttt |
288 |
Q |
| |
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|||||||||| ||| |||| ||||||| |||||||| |
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| T |
47051016 |
catcatgagataatatctcaacatccctaatatctttt |
47051053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 288
Target Start/End: Original strand, 48105958 - 48106096
Alignment:
| Q |
149 |
caactatttgctcaagtttgtggacatgttttagaacattcgtaacaaacacaaattcaaaccaattgccaacacaaccttcaaattcaattacttttag |
248 |
Q |
| |
|
|||| |||||||||||||| || |||| ||||| ||||||| |||||||| ||| |||| ||||||| ||||||||||| | |||||||| ||||||| |
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| T |
48105958 |
caaccatttgctcaagtttatgaacatattttaaaacattcctaacaaactcaatttcataccaattatcaacacaacctcccaattcaataacttttac |
48106057 |
T |
|
| Q |
249 |
ctcatcatgagagaatccttcaatatccctactatctttt |
288 |
Q |
| |
|
|| |||||||| ||| ||||| ||||||| |||||||| |
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| T |
48106058 |
ct-gtcatgagataatatttcaacatccctaatatctttt |
48106096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 48895825 - 48895763
Alignment:
| Q |
177 |
ttttagaacattcgtaacaaacacaaattcaaaccaattgccaacacaaccttcaaattcaat |
239 |
Q |
| |
|
||||||||||||| |||||||| ||| ||||||||||||||||||||||||| | |||||||| |
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|
| T |
48895825 |
ttttagaacattcataacaaactcaatttcaaaccaattgccaacacaacctcccaattcaat |
48895763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 48452879 - 48452957
Alignment:
| Q |
159 |
ctcaagtttgtggacatgttttagaacattcgtaacaaacacaaattcaaaccaattgccaacacaaccttcaaattcaat |
239 |
Q |
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||||||||||||| ||| ||||| |||||| | |||||| ||| |||| || ||||||||||||||||| | |||||||| |
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| T |
48452879 |
ctcaagtttgtgggcatatttta--acattcatgacaaactcaatttcatacgaattgccaacacaacctcccaattcaat |
48452957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 50460402 - 50460291
Alignment:
| Q |
150 |
aactatttgctcaagtttgtggacatgttttagaacattcgtaacaaacacaaattcaaaccaattgccaacacaaccttcaaattcaattacttttagc |
249 |
Q |
| |
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||||||| ||||| |||| ||| ||| ||| ||| ||||| | |||||| ||| |||| |||||||||||||||| ||| | |||||||| ||| | | | |
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| T |
50460402 |
aactattcgctcatgtttctgggcatatttcagagcattcattacaaactcaatttcataccaattgccaacacagcctcccaattcaataactctgatc |
50460303 |
T |
|
| Q |
250 |
tcatcatgagag |
261 |
Q |
| |
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|| ||||||||| |
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|
| T |
50460302 |
tcgtcatgagag |
50460291 |
T |
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