View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3827_high_18 (Length: 248)
Name: NF3827_high_18
Description: NF3827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3827_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 44913411 - 44913198
Alignment:
| Q |
19 |
gggagtgaagccatgaatgaaaacaacagtttcaataccaatcttccaactcttgaaagtggaaactgagaaaggtggggtgcactaatgaagaactttt |
118 |
Q |
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| T |
44913411 |
gggagtgaagccatgaatgaaaacaacagtttcaataccaatcttccaactcttgaaagtggaaactgagaaaggtggggtgcactaatgaagaactttt |
44913312 |
T |
|
| Q |
119 |
ttggggcacaagatttgctggaaattgtgcaaaacgattatgatgagtttggtgaaaattctactgaggtgcagaggaatgcatacaaagaatttaagaa |
218 |
Q |
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| T |
44913311 |
ttggggcacaagatttgctggaaattgtgcaaaacgattatgatgaatttggtgaaaattctactgaggtgcagaggaatgcatacaaagaatttaagaa |
44913212 |
T |
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| Q |
219 |
gaaggactgcaagg |
232 |
Q |
| |
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|||||||||||||| |
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| T |
44913211 |
gaaggactgcaagg |
44913198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 152
Target Start/End: Complemental strand, 17786046 - 17785919
Alignment:
| Q |
25 |
gaagccatgaatgaaaacaacagtttcaataccaatcttccaactcttgaaagtggaaactgagaaaggtggggtgcactaatgaagaacttttttgggg |
124 |
Q |
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|||||||||||||| | || ||||| || || ||||||||| ||||||| | ||| || ||||| ||| ||||| | |||||||| ||||||||| |
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| T |
17786046 |
gaagccatgaatgatagcagtagttttaacactcatcttccaattcttgaaggacaaaattgggaaagatggagtgcagtgatgaagaatctttttgggg |
17785947 |
T |
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| Q |
125 |
cacaagatttgctggaaattgtgcaaaa |
152 |
Q |
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| T |
17785946 |
cacaagattggttggaaattgtgcaaaa |
17785919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 22931517 - 22931314
Alignment:
| Q |
21 |
gagtgaagccatgaatgaaaacaacagtttcaataccaatcttccaactcttgaaagtggaaactgagaaaggtggggtgcactaatgaagaactttttt |
120 |
Q |
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||||||||||||||||| |||| |||||||||||| |||||||||| |||||||||||||| || ||||| ||| ||| | |||||||| | ||| |
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| T |
22931517 |
gagtgaagccatgaatggtaacagcagtttcaatactcatcttccaacccttgaaagtggaaattgggaaagttggagtgttgtgatgaagaatctgttt |
22931418 |
T |
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| Q |
121 |
ggggcacaagatttgctggaaattgtgcaaaacgattatgatgagtttggtgaaaattctactgaggtgcagaggaatgcatacaaagaatttaagaaga |
220 |
Q |
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|||||| | ||||| | | ||||||||||||| ||||||||| | ||||||||| |||||||| |||| |||||||||||||| || || ||||||| |
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| T |
22931417 |
ggggcaaaggatttatttaatattgtgcaaaacggttatgatgaactgggtgaaaatcctactgagatgcataggaatgcatacaaggagttaaagaaga |
22931318 |
T |
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| Q |
221 |
agga |
224 |
Q |
| |
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|||| |
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| T |
22931317 |
agga |
22931314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 25268795 - 25268685
Alignment:
| Q |
30 |
catgaatgaaaacaacagtttcaataccaatcttccaactcttgaaagtggaaactgagaaaggtggggtgcactaatgaagaacttttttggggcacaa |
129 |
Q |
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|||||||| ||||||||||||||||| ||||||||| ||||||| ||||||| || ||||| ||| ||| | |||||||| | |||||||||||| |
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| T |
25268795 |
catgaatggtaacaacagtttcaatactcatcttccaattcttgaaggtggaaattgggaaagatggagtgttgtgatgaagaatctgtttggggcacaa |
25268696 |
T |
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| Q |
130 |
gatttgctgga |
140 |
Q |
| |
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|||||| |||| |
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| T |
25268695 |
gatttgttgga |
25268685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 13270681 - 13270617
Alignment:
| Q |
88 |
gaaaggtggggtgcactaatgaagaacttttttggggcacaagatttgctggaaattgtgcaaaa |
152 |
Q |
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||||| ||||||||| | |||||||| | ||||| ||||||||| || |||||||||||||||| |
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| T |
13270681 |
gaaagatggggtgcaatgatgaagaatctgtttggagcacaagatctgttggaaattgtgcaaaa |
13270617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 15067003 - 15066897
Alignment:
| Q |
45 |
cagtttcaataccaatcttccaactcttgaaagtggaaactgagaaaggtggggtgcactaatgaagaacttttttggggcacaagatttgctggaaatt |
144 |
Q |
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|||||||||||| ||||||||| ||||||| | ||||||| ||||| ||| || | ||||||||| | ||||||||||| |||||| |||||||| |
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| T |
15067003 |
cagtttcaatacacatcttccaattcttgaaggaagaaactgggaaagatggagtacttcgatgaagaacctgtttggggcacacgatttgttggaaatt |
15066904 |
T |
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| Q |
145 |
gtgcaaa |
151 |
Q |
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||||||| |
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| T |
15066903 |
gtgcaaa |
15066897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 31355141 - 31355244
Alignment:
| Q |
46 |
agtttcaataccaatcttccaactcttgaaagtggaaactgagaaaggtggggtgcactaatgaagaacttttttggggcacaagatttgctggaaattg |
145 |
Q |
| |
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|||||||| || ||||||||| ||||||| ||||||| ||||| ||| |||||| |||||||| ||||| |||||||||||||||||||||| |
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| T |
31355141 |
agtttcaacactcatcttccaattcttgaagcaagaaactgggaaagatggaatgcactgatgaagaatcagtttggagcacaagatttgctggaaattg |
31355240 |
T |
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| Q |
146 |
tgca |
149 |
Q |
| |
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|||| |
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|
| T |
31355241 |
tgca |
31355244 |
T |
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