View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3827_high_20 (Length: 247)
Name: NF3827_high_20
Description: NF3827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3827_high_20 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 5371413 - 5371178
Alignment:
| Q |
16 |
gtattttctgaagatgactcacttctaatatctggttttaaaaatggaagcgtacgagtttggtctctcttaatgtacttgatactcatctcgtctctcc |
115 |
Q |
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| T |
5371413 |
gtattttctgaagatgactcacttctaatatctggttttaaaaatggaagcgtacgagtttggtctctcttaatgtatttgatactcatctcgtctctcc |
5371314 |
T |
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| Q |
116 |
attttttcacctcttattgtttgttttcccttttgggatta----tatagaagtgctgattattgtgtaaaacactactatgcatcatatggttcaggat |
211 |
Q |
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| T |
5371313 |
attttttcacctcttattgtttgttttcccttttgggattatatatatagaagtgctgaccattgtgtaaaacactactatgcatcatatggttcaggat |
5371214 |
T |
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| Q |
212 |
atttgatgatgtgagaaaacgggaagcaagcaagat |
247 |
Q |
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| T |
5371213 |
atttgatgatgtgagaagacgggaagcaagcaagat |
5371178 |
T |
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