View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3827_high_21 (Length: 242)
Name: NF3827_high_21
Description: NF3827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3827_high_21 |
 | |
|
| [»] scaffold0264 (1 HSPs) |
| |
|
| [»] scaffold0074 (1 HSPs) |
| |
|
| [»] scaffold0007 (1 HSPs) |
| |
|
| [»] chr6 (13 HSPs) |
| |
|
Alignment Details
Target: scaffold0264 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 14927 - 15153
Alignment:
| Q |
16 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttgggtccaatatacttaaaggtgtttgatccatccattg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14927 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttgggtccaatatacttaaaggtgtttgatccatccattg |
15026 |
T |
|
| Q |
116 |
tctccatacttgaaataatgtgtgaaatccgatttctcaactaatatccaggtcgaatgtgatatattcaagtgcaaataatatatatttcttgtaactc |
215 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15027 |
tctccatacctgaaataatgtgtgaaatccgatttctcaactaatatccaggtcgtatgtgatttattcaagtgcaaataatatatatttcttgtaactc |
15126 |
T |
|
| Q |
216 |
gaaaagaagctctcgtaactcgaaatc |
242 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
15127 |
gaaaagaagctctcgtaactcgaaatc |
15153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 50367 - 50141
Alignment:
| Q |
16 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttgggtccaatatacttaaaggtgtttgatccatccattg |
115 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| || |
|
|
| T |
50367 |
ataacagaccaatctgaatgcatttaatgacttcatttgtagaataatcttctttaatatttgggtccaaaatacttataggtgtttgatccatccactg |
50268 |
T |
|
| Q |
116 |
tctccatacttgaaataatgtgtgaaatccgatttctcaactaatatccaggtcgaatgtgatatattcaagtgcaaataatatatatttcttgtaactc |
215 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||| ||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
50267 |
tctccatacctgaaataatgtgtgaaatccaatttctcaacaaatatccaggtggcatgtgatatattcaagagcaaataatatatatttcttgtaactc |
50168 |
T |
|
| Q |
216 |
gaaaagaagctctcgtaactcgaaatc |
242 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
50167 |
gaaaagaagctctcgtaactcgaaatc |
50141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 7901 - 7675
Alignment:
| Q |
16 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttgggtccaatatacttaaaggtgtttgatccatccattg |
115 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7901 |
ataacagaccaatctgaatgcatttaatgacttcatttgtagaataatcttttttaatatttgggtccaatatacttaaaggtgtttgatccatccactg |
7802 |
T |
|
| Q |
116 |
tctccatacttgaaataatgtgtgaaatccgatttctcaactaatatccaggtcgaatgtgatatattcaagtgcaaataatatatatttcttgtaactc |
215 |
Q |
| |
|
||||||||| ||||||||||| |||||||| ||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7801 |
tctccatacctgaaataatgtatgaaatccaatttctcaactaatatccacgtcgcatgtgatatatttaagtgcaaataatatatatttcttgtaactc |
7702 |
T |
|
| Q |
216 |
gaaaagaagctctcgtaactcgaaatc |
242 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
7701 |
gaaaagaagctctcgtaacttgaaatc |
7675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 18995092 - 18995318
Alignment:
| Q |
16 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttgggtccaatatacttaaaggtgtttgatccatccattg |
115 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||| || |
|
|
| T |
18995092 |
ataacagaccaatctgaatgcatttaatgacttcatttgcagaataatcttctttaatatttaggtccaaaatacttataggtgtttgatccatccactg |
18995191 |
T |
|
| Q |
116 |
tctccatacttgaaataatgtgtgaaatccgatttctcaactaatatccaggtcgaatgtgatatattcaagtgcaaataatatatatttcttgtaactc |
215 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18995192 |
tctccatacctgaaataatgtgtgaaatccaatttctcaactaatatccaggtcgcatgtgatatatttaagtgcaaataatatatatttcttgtaactc |
18995291 |
T |
|
| Q |
216 |
gaaaagaagctctcgtaactcgaaatc |
242 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
18995292 |
gaaaagaagctctcgtaactcgaaatc |
18995318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 20235417 - 20235593
Alignment:
| Q |
16 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttgggtccaatatacttaaaggtgtttgatccatccattg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20235417 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttcttgaatatttgggtccaaaatacttaaaggtgtttgatccatccattg |
20235516 |
T |
|
| Q |
116 |
tctccatacttgaaataatgtgtgaaatccgatttctcaactaatatccaggtcgaatgtgatatattcaagtgcaa |
192 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||||||| || ||||| ||||| |||||||||||| ||| |||| |
|
|
| T |
20235517 |
tctccatacctgaattaatgtgtgaaattaaatttctcagttattatcctggtcgtatgtgatatatttaagagcaa |
20235593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 22129401 - 22129577
Alignment:
| Q |
16 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttgggtccaatatacttaaaggtgtttgatccatccattg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22129401 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttcttgaatatttgggtccaaaatacttaaaggtgtttgatccatccattg |
22129500 |
T |
|
| Q |
116 |
tctccatacttgaaataatgtgtgaaatccgatttctcaactaatatccaggtcgaatgtgatatattcaagtgcaa |
192 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||||||| || ||||| ||||| |||||||||||| ||| |||| |
|
|
| T |
22129501 |
tctccatacctgaattaatgtgtgaaattaaatttctcagttattatcctggtcgtatgtgatatatttaagagcaa |
22129577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 22209733 - 22209585
Alignment:
| Q |
16 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttgggtccaatatacttaaaggtgtttgatccatccattg |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22209733 |
ataatagaccaatctgaatgtacttaattacttcatttgtagaataatcttcttgaatatttgggtccaaaatacttaaaggtgtttgatccatccattg |
22209634 |
T |
|
| Q |
116 |
tctccatacttgaaataatgtgtgaaatccgatttctcaactaatatcc |
164 |
Q |
| |
|
||||||||| ||||||| |||||||||| ||||||||| || ||||| |
|
|
| T |
22209633 |
tctccatacctgaaatattgtgtgaaattaaatttctcaattactatcc |
22209585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 20083446 - 20083573
Alignment:
| Q |
16 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttgggtccaatatacttaaaggtgtttgatccatccattg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| | |
|
|
| T |
20083446 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttggatccagtatacttaaaggtgtttgctccatccacag |
20083545 |
T |
|
| Q |
116 |
tctccatacttgaaataatgtgtgaaat |
143 |
Q |
| |
|
||||||||| |||||||||||||||||| |
|
|
| T |
20083546 |
tctccatacctgaaataatgtgtgaaat |
20083573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 18990502 - 18990629
Alignment:
| Q |
16 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttgggtccaatatacttaaaggtgtttgatccatccattg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| |||||||| | |
|
|
| T |
18990502 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttcttcaatatttggatccagtatacttaaaggtgtttcctccatccaccg |
18990601 |
T |
|
| Q |
116 |
tctccatacttgaaataatgtgtgaaat |
143 |
Q |
| |
|
||||||||| |||||||||||||||||| |
|
|
| T |
18990602 |
tctccatacctgaaataatgtgtgaaat |
18990629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 22001509 - 22001623
Alignment:
| Q |
16 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttgggtccaatatacttaaaggtgtttgatccatccattg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| || |
|
|
| T |
22001509 |
ataatagaccaatctgaatgcacttaatgacttcagttttagaataatctcctttaatatttgggtccaatatatttaaaggtgttttatccatccactg |
22001608 |
T |
|
| Q |
116 |
tctccatacttgaaa |
130 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
22001609 |
tctccatacctgaaa |
22001623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 22085568 - 22085682
Alignment:
| Q |
16 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttgggtccaatatacttaaaggtgtttgatccatccattg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| || |
|
|
| T |
22085568 |
ataatagaccaatctgaatgcacttaatgacttcagttttagaataatctcctttaatatttgggtccaatatatttaaaggtgttttatccatccactg |
22085667 |
T |
|
| Q |
116 |
tctccatacttgaaa |
130 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
22085668 |
tctccatacctgaaa |
22085682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 18979150 - 18979277
Alignment:
| Q |
16 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttgggtccaatatacttaaaggtgtttgatccatccattg |
115 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| |||| ||||||||||||||||| |||||||| | |
|
|
| T |
18979150 |
ataatcgaccaatctaaatgcacttaatgacttcatttgtagaatgatattctttaatatttggatccagtatacttaaaggtgtttcctccatccaccg |
18979249 |
T |
|
| Q |
116 |
tctccatacttgaaataatgtgtgaaat |
143 |
Q |
| |
|
||||||||| |||||||||||||||||| |
|
|
| T |
18979250 |
tctccatacctgaaataatgtgtgaaat |
18979277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 21967239 - 21967353
Alignment:
| Q |
16 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttgggtccaatatacttaaaggtgtttgatccatccattg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||| |||||||||||| ||||||||| || |
|
|
| T |
21967239 |
ataatagaccaatctgaatgcacttaatgacttcagttttagaaaaatctcctttaatatttgggtccaatatatttaaaggtgttttatccatccactg |
21967338 |
T |
|
| Q |
116 |
tctccatacttgaaa |
130 |
Q |
| |
|
|||||| || ||||| |
|
|
| T |
21967339 |
tctccacacctgaaa |
21967353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 21967685 - 21967799
Alignment:
| Q |
16 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttgggtccaatatacttaaaggtgtttgatccatccattg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||| |||||||||||| ||||||||| || |
|
|
| T |
21967685 |
ataatagaccaatctgaatgcacttaatgacttcagttttagaaaaatctcctttaatatttgggtccaatatatttaaaggtgttttatccatccactg |
21967784 |
T |
|
| Q |
116 |
tctccatacttgaaa |
130 |
Q |
| |
|
|||||| || ||||| |
|
|
| T |
21967785 |
tctccacacctgaaa |
21967799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 20233854 - 20233749
Alignment:
| Q |
16 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttc-tttaatatttgggtccaatatacttaaaggtgtttgatccatccatt |
114 |
Q |
| |
|
|||||| ||||||||||||||| ||||| |||||| || |||||| ||||| ||||||||||||||| ||||| ||||| ||| ||| |||| |||||| |
|
|
| T |
20233854 |
ataataaaccaatctgaatgcatttaattacttcaatttcagaata-tcttcctttaatatttgggtctaatatgcttaatggtatttcatccctccatt |
20233756 |
T |
|
| Q |
115 |
gtctcca |
121 |
Q |
| |
|
|| |||| |
|
|
| T |
20233755 |
gtttcca |
20233749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 22127838 - 22127733
Alignment:
| Q |
16 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttc-tttaatatttgggtccaatatacttaaaggtgtttgatccatccatt |
114 |
Q |
| |
|
|||||| ||||||||||||||| ||||| |||||| || |||||| ||||| ||||||||||||||| ||||| ||||| ||| ||| |||| |||||| |
|
|
| T |
22127838 |
ataataaaccaatctgaatgcatttaattacttcaatttcagaata-tcttcctttaatatttgggtctaatatgcttaatggtatttcatccctccatt |
22127740 |
T |
|
| Q |
115 |
gtctcca |
121 |
Q |
| |
|
|| |||| |
|
|
| T |
22127739 |
gtttcca |
22127733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 10401134 - 10401239
Alignment:
| Q |
16 |
ataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttgggtccaatatacttaaaggtgtttgatccatccattg |
115 |
Q |
| |
|
|||||| ||||||||||||||| || ||||| |||| | ||||||| | ||||||||||| |||||||||||||||| | | ||||||| ||||||| |
|
|
| T |
10401134 |
ataataaaccaatctgaatgcatttgatgacctcatattcagaataagttcctttaatattttggtccaatatacttaatgttatttgatcactccattg |
10401233 |
T |
|
| Q |
116 |
tctcca |
121 |
Q |
| |
|
|||||| |
|
|
| T |
10401234 |
tctcca |
10401239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University