View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3827_high_24 (Length: 236)
Name: NF3827_high_24
Description: NF3827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3827_high_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 15874544 - 15874341
Alignment:
| Q |
16 |
aaaggtttgatcgaaataatcaaatttcgattcctaagatccaaagggttccaatgtttttgcggcaaaaggaaagattttataagtattgtaaaccaaa |
115 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
15874544 |
aaaggtttgatcgaaataatcgaatttcgattcctaagatccaaagggttccaatatttttgcggcaaaatgaaagattttataagtattgttcaccaaa |
15874445 |
T |
|
| Q |
116 |
gattatattatttggtcctattcatcacaagaatgaaagtctgaaagaaggagagcattacaagcttctatggacatcaatatttgttgctaattatggc |
215 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15874444 |
gattatatcatttggtcctattcatcacaatgctaaaaatctgaaagaaggagagcattacaagcttctatggacatcaatatttgttgctaattatgcc |
15874345 |
T |
|
| Q |
216 |
aaaa |
219 |
Q |
| |
|
|||| |
|
|
| T |
15874344 |
aaaa |
15874341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 15899525 - 15899728
Alignment:
| Q |
16 |
aaaggtttgatcgaaataatcaaatttcgattcctaagatccaaagggttccaatgtttttgcggcaaaaggaaagattttataagtattgtaaaccaaa |
115 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
15899525 |
aaaggtttgatcgaaataatgaaattttgattcctaggatccaaagggttccaatgtttttgcggcaaaatgaaagattttataagtattgtacaccaaa |
15899624 |
T |
|
| Q |
116 |
gattatattatttggtcctattcatcacaagaatgaaagtctgaaagaaggagagcattacaagcttctatggacatcaatatttgttgctaattatggc |
215 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15899625 |
gattatatcatttggtcctattcatcacaatgctaaaaatctgaaagaaggagagcattacaagcttctatggacatcaatatttgttgctgattatggc |
15899724 |
T |
|
| Q |
216 |
aaaa |
219 |
Q |
| |
|
|||| |
|
|
| T |
15899725 |
aaaa |
15899728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 15920553 - 15920756
Alignment:
| Q |
16 |
aaaggtttgatcgaaataatcaaatttcgattcctaagatccaaagggttccaatgtttttgcggcaaaaggaaagattttataagtattgtaaaccaaa |
115 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
15920553 |
aaaggtttgatcgaaataatgaaattttgattcctaggatccaaagggttccaatgtttttgcggcaaaatgaaagattttataagtattgtacaccaaa |
15920652 |
T |
|
| Q |
116 |
gattatattatttggtcctattcatcacaagaatgaaagtctgaaagaaggagagcattacaagcttctatggacatcaatatttgttgctaattatggc |
215 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15920653 |
gattatatcatttggtcctattcatcacaatgctaaaaatctgaaagaaggagagcattacaagcttctatggacatcaatatttgttgcttattatggc |
15920752 |
T |
|
| Q |
216 |
aaaa |
219 |
Q |
| |
|
|||| |
|
|
| T |
15920753 |
aaaa |
15920756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 14060955 - 14060785
Alignment:
| Q |
20 |
gtttgatcgaaataatcaaatttcgattcctaagatccaaagggttccaatgtttttgcggcaaaaggaaagattttataagtattgtaaaccaaagatt |
119 |
Q |
| |
|
|||||| | ||||| | ||||||| ||||||||||| ||||||||||| | ||||||||| ||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
14060955 |
gtttgagcaaaatagtaaaatttcaattcctaagattcaaagggttcctaagtttttgcgacaaaatgaaagattttataagtattgctcaccaaagatt |
14060856 |
T |
|
| Q |
120 |
atattatttggtcctattcatcacaagaatgaaagtctgaaagaaggagagcattacaagcttctatggac |
190 |
Q |
| |
|
|||| ||||||||| || |||||||| ||| || |||| |||||||||||||| ||||| ||||||||||| |
|
|
| T |
14060855 |
atatcatttggtccgatccatcacaataataaatgtcttaaagaaggagagcagtacaaacttctatggac |
14060785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 14049570 - 14049400
Alignment:
| Q |
20 |
gtttgatcgaaataatcaaatttcgattcctaagatccaaagggttccaatgtttttgcggcaaaaggaaagattttataagtattgtaaaccaaagatt |
119 |
Q |
| |
|
|||||| | ||||| ||||||||| ||||||||||||||||||||||||| ||||||| | ||||| |||||||||||||||| ||| |
|
|
| T |
14049570 |
gtttgagcaaaatagtcaaatttcaattcctaagatccaaagggttccaaagtttttgagacaaaatgaaagattttataagt--------------att |
14049485 |
T |
|
| Q |
120 |
atattatttggtcctattcatcacaagaatgaaagtctgaaagaaggagagcattacaagcttctatggacatcaatatttgttg |
204 |
Q |
| |
|
|| | ||||||||| || |||||||| | |||| |||| |||||||||||||||||||||||||| |||||||| | |||||||| |
|
|
| T |
14049484 |
atctcatttggtcccatccatcacaatagtgaatgtcttaaagaaggagagcattacaagcttctgtggacatctacatttgttg |
14049400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University