View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3827_high_8 (Length: 447)
Name: NF3827_high_8
Description: NF3827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3827_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 431
Target Start/End: Original strand, 20693117 - 20693527
Alignment:
| Q |
14 |
aggtgcatattttaaaggatatataattttggctaagctatttggtatttgtgagatgaattctttagaagttactcaaagaagtatgttatatgcatga |
113 |
Q |
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| T |
20693117 |
aggtgcatattttaaaggatatataattttggctaagctatttggtatttgtgagatggattctttagaagttactcaaagaagtatgttatatgcatga |
20693216 |
T |
|
| Q |
114 |
cgtattttaaaagnnnnnnnnnatcttattcaacatttgaatcactcgttagaaatacccttctaatatttcttttcgatgtgtgcttaaaaaaggcaac |
213 |
Q |
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|||||||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
20693217 |
cgtattttaaaa---attctttatgttatttaacatttgaatcactcgttaggaatacccttctaatatttcttttcggcctgtgcttaaaaaagacaac |
20693313 |
T |
|
| Q |
214 |
tattgcatggatttctaggtaagctcaaacactatttaaagtaaggtgtgttcttttgacaaactcctccgttagagtcgaagactttgttgatgcttga |
313 |
Q |
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||||||||||||||||||| || ||||||| ||||| ||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
20693314 |
tattgcatggatttctaggcaaactcaaacgctattcaaagtaaggtgtgtttttttgacaaactcctccattggagtcgaagactttgttgatgcttga |
20693413 |
T |
|
| Q |
314 |
cacccaaggcaaatctctgttcttaatgttctaannnnnnnacttaactataattttgactccttannnnnnnnactcattcacgaaattaattacccat |
413 |
Q |
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||||||||||||||||| ||||||| |||||||| |||||||||||||||| || |||| |||||||||||||||||||||||||| |
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| T |
20693414 |
cacccaaggcaaatctccgttcttagtgttctaatattcgtgcttaactataattttggct-ctta---tttttactcattcacgaaattaattacccat |
20693509 |
T |
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| Q |
414 |
ttaaaatcacattcttct |
431 |
Q |
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||||||||| |||||||| |
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| T |
20693510 |
ttaaaatcaaattcttct |
20693527 |
T |
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