View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3827_high_9 (Length: 445)
Name: NF3827_high_9
Description: NF3827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3827_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 28976896 - 28976457
Alignment:
| Q |
1 |
atgtaaccatacagaggg-ataaaggaaaaatcattgaagcattcttattaaaaactaacaatgaatcaaatgaatcgatatctttaatcaataaagtaa |
99 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28976896 |
atgtaaccataaagaggggataaaggaaaaatcattgaagcattcttattagaaactaacaatgaatcaaatgaatcgatatctttaatcaataaagtaa |
28976797 |
T |
|
| Q |
100 |
atatttcagattcaatcaagtgacctaaacctaagtcagatgtttatttatatcttcaaaatatctgtttctttttaagttttgttttaaaataaagaat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28976796 |
atatttcagattcaatcaagtgacctaaacctaagtcagatgtttatttatatcttcaaaatatctgtttctttttaagttttgttttaatataaagaat |
28976697 |
T |
|
| Q |
200 |
ctcttccaatttaacagtatctttaaaagatcaaattattattttgccaatcatacatttatgatttatcttcatctaattaatcaataagagaagtgct |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28976696 |
ctcttccaatttaacagtatctttaaaagatcaaattattattttgccaatcatacatttatgatttatcttcatctaattaatcaataagagaagtgct |
28976597 |
T |
|
| Q |
300 |
tattactctcttggcttcaaacatgacatcaatatattttcttctttctttctctatttattgcacgttctgtcataaatcatgaaaaatgaccaagtgg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28976596 |
tattactctcttggcttcaaacatgacatcaatatattttcttctttctttctctatttattgcacgttctgtcataaatcatgaaaaatgaccaagtgg |
28976497 |
T |
|
| Q |
400 |
ttaagtcgcgaatattattttgcaagcatacctatgattc |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28976496 |
ttaagtcgcgaatattattttgcaagcatacctgtgattc |
28976457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University