View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3827_low_1 (Length: 889)

Name: NF3827_low_1
Description: NF3827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3827_low_1
NF3827_low_1
[»] chr3 (13 HSPs)
chr3 (403-871)||(3744891-3745364)
chr3 (678-802)||(4142865-4142989)
chr3 (46-240)||(3744654-3744846)
chr3 (678-802)||(4158675-4158799)
chr3 (678-796)||(3753784-3753902)
chr3 (9-52)||(3734407-3734450)
chr3 (678-792)||(967869-967983)
chr3 (742-802)||(803952-804012)
chr3 (676-790)||(1931894-1932008)
chr3 (676-781)||(1937714-1937819)
chr3 (676-792)||(2679176-2679292)
chr3 (752-790)||(988687-988725)
chr3 (744-802)||(12132320-12132378)
[»] chr5 (4 HSPs)
chr5 (603-796)||(11081304-11081497)
chr5 (676-790)||(1428494-1428608)
chr5 (744-790)||(23764997-23765043)
chr5 (744-790)||(23814845-23814891)
[»] chr8 (2 HSPs)
chr8 (747-792)||(31145143-31145188)
chr8 (678-790)||(19727117-19727229)
[»] chr1 (1 HSPs)
chr1 (713-796)||(25611733-25611819)
[»] chr4 (2 HSPs)
chr4 (166-231)||(23976449-23976514)
chr4 (753-790)||(22672879-22672916)
[»] chr7 (1 HSPs)
chr7 (185-231)||(11372315-11372361)


Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 403 - 871
Target Start/End: Original strand, 3744891 - 3745364
Alignment:
Q  403 aagaaagatatgcgaagataacataaaacaaaaacactcgttactagcccnnnnnnnnnnnnnnnnnnnnnnnataatcagatatatcagccttctata- 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||                       ||||||||||||||||||||||||||     
T  3744891 aagaaagatatgcgaagataacataaaacaaaaacactcgttactagcccttttatttttatttttattttttataatcagatatatcagccttctatat 3744990  T
Q  502 -tattgcattcattaggtttaaggttttagggtttagagtcacaaccgtatatggcttcttcgggtagcaagaggcgtgatcaaaacggtgccgtttatt 600  Q
     |||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  3744991 atattgcattcgttaggtttaaggttttagggtttagagtcacaactgaatatggcttcttggggtagcaagaggcgtgatcaaaacggtgctgtttatt 3745090  T
Q  601 cctctacgacagaggaaacaacttccatcaacaatcatctctcggttgtaccaagtaagcacctttgtgtgtccaccactcttccttccgacgtcattcc 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3745091 cctctacgacagaggaaacaacttccatcaacaatcatctctcggttgtaccaagtaagcaccttcgtgtgtccaccactcttccttccgacgtcattcc 3745190  T
Q  701 agaaatcttatataggctaccggtcaagttcatccttcgattccgatgtgtttgcaagtcatggaattctctaatatctgatcccaaatttgtcaaaaag 800  Q
    ||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3745191 agaaatcttatgtaggctaccggtgaagttcatccttcaattccgatgtgtttgcaagtcatggaattctctaatatctgatcccaaatttgtcaaaaag 3745290  T
Q  801 cagttacatgtgtctactgctcgaaacatcca---cttactctacgaccacacccgttacttaggcaagtacat 871  Q
    |||||| |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  3745291 cagttaaatgtgtctactgctcgaaacatccacttcttactctacgaccacacccgttacttaggcaagtacat 3745364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 678 - 802
Target Start/End: Complemental strand, 4142989 - 4142865
Alignment:
Q  678 actcttccttccgacgtcattccagaaatcttatataggctaccggtcaagttcatccttcgattccgatgtgtttgcaagtcatggaattctctaatat 777  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142989 actcttccttccgacgtcattccagaaatcatatgtaggctaccagtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattctctaatat 4142890  T
Q  778 ctgatcccaaatttgtcaaaaagca 802  Q
    ||||||||||||| ||||| |||||    
T  4142889 ctgatcccaaattcgtcaagaagca 4142865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 46 - 240
Target Start/End: Original strand, 3744654 - 3744846
Alignment:
Q  46 atataaatagatagatagctctctctctacccattgtannnnnnnnnnnnnacgtttggtttcgaactttagaaaatctgcttagaaaatggttacggat 145  Q
    ||||||||||||||||||||||||||||||||||||||             |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3744654 atataaatagatagatagctctctctctacccattgtattttttattttttacgtttggtttcaaactttagaaaatctgcttagaaaatggttacggat 3744753  T
Q  146 gtcacagttgatattaactgatattaactatttttcatcaaactacatgtcattgttgtatatg--------tcaaaatattaaagttattattattgaa 237  Q
    ||||||||          ||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  3744754 gtcacagt----------tgatattaactatttttcatcaaactacatgtcattgttgtatatgtcaaatattcaaaatattaaagttattattattgaa 3744843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 678 - 802
Target Start/End: Complemental strand, 4158799 - 4158675
Alignment:
Q  678 actcttccttccgacgtcattccagaaatcttatataggctaccggtcaagttcatccttcgattccgatgtgtttgcaagtcatggaattctctaatat 777  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  4158799 actcttccttccgacgtcattctagaaatcatatgtaggctaccggtaaagttcatcctccgattccaatgtgtttgcaagtcatggaattctctaatat 4158700  T
Q  778 ctgatcccaaatttgtcaaaaagca 802  Q
    ||||||||||||| ||||| |||||    
T  4158699 ctgatcccaaattcgtcaagaagca 4158675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 678 - 796
Target Start/End: Original strand, 3753784 - 3753902
Alignment:
Q  678 actcttccttccgacgtcattccagaaatcttatataggctaccggtcaagttcatccttcgattccgatgtgtttgcaagtcatggaattctctaatat 777  Q
    |||||||||| ||||||||||||||||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3753784 actcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatat 3753883  T
Q  778 ctgatcccaaatttgtcaa 796  Q
    | ||||| ||||| |||||    
T  3753884 ccgatccaaaattcgtcaa 3753902  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 3734407 - 3734450
Alignment:
Q  9 acatcatcagaacttagaatatatagctcaagtttgtatataaa 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  3734407 acatcatcataacttagaatatatagctcaagtttgtatataaa 3734450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 678 - 792
Target Start/End: Original strand, 967869 - 967983
Alignment:
Q  678 actcttccttccgacgtcattccagaaatcttatataggctaccggtcaagttcatccttcgattccgatgtgtttgcaagtcatggaattctctaatat 777  Q
    |||||||||| |||  |||||||||||||  ||| ||||||| |||| ||| || || | | |||||||||||| |||||||| ||||||||||||||      
T  967869 actcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaatca 967968  T
Q  778 ctgatcccaaatttg 792  Q
    ||||| | |||||||    
T  967969 ctgattctaaatttg 967983  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 742 - 802
Target Start/End: Complemental strand, 804012 - 803952
Alignment:
Q  742 tccgatgtgtttgcaagtcatggaattctctaatatctgatcccaaatttgtcaaaaagca 802  Q
    ||||||| ||||||||||||||||||||||||||||  ||| |||| |||| |||||||||    
T  804012 tccgatgcgtttgcaagtcatggaattctctaatatgcgatgccaactttgccaaaaagca 803952  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 676 - 790
Target Start/End: Complemental strand, 1932008 - 1931894
Alignment:
Q  676 ccactcttccttccgacgtcattccagaaatcttatataggctaccggtcaagttcatccttcgattccgatgtgtttgcaagtcatggaattctctaat 775  Q
    |||||||||||| |||  |||||||||||||| | | ||||||| | || ||| || |  |  ||||||| || ||||||||||||| ||||||||||||    
T  1932008 ccactcttcctttcgatctcattccagaaatcctctgtaggctatccgtgaagctccttgtgagattccggtgcgtttgcaagtcatagaattctctaat 1931909  T
Q  776 atctgatcccaaatt 790  Q
     ||||| ||||||||    
T  1931908 ctctgaccccaaatt 1931894  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 781
Target Start/End: Complemental strand, 1937819 - 1937714
Alignment:
Q  676 ccactcttccttccgacgtcattccagaaatcttatataggctaccggtcaagttcatccttcgattccgatgtgtttgcaagtcatggaattctctaat 775  Q
    ||||||||||||  ||  |||||||||||||| | | ||||||| |||| ||  || ||||  ||||||| || ||||||||||||| ||||||||||||    
T  1937819 ccactcttccttttgatctcattccagaaatcctctctaggctatcggtgaaactcctcctgagattccggtgcgtttgcaagtcatagaattctctaat 1937720  T
Q  776 atctga 781  Q
     |||||    
T  1937719 ttctga 1937714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 676 - 792
Target Start/End: Complemental strand, 2679292 - 2679176
Alignment:
Q  676 ccactcttccttccgacgtcattccagaaatcttatataggctaccggtcaagttcatccttcgattccgatgtgtttgcaagtcatggaattctctaat 775  Q
    |||||||||||| |||| |||| ||||| ||  | | |||| ||| ||| || ||| |||||| | |||||||||| |||||||||||||| ||||| ||    
T  2679292 ccactcttcctttcgacctcatcccagatatactgtctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctctgat 2679193  T
Q  776 atctgatcccaaatttg 792  Q
     || ||||| |||||||    
T  2679192 ctccgatccaaaatttg 2679176  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 790
Target Start/End: Original strand, 988687 - 988725
Alignment:
Q  752 ttgcaagtcatggaattctctaatatctgatcccaaatt 790  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  988687 ttgcaagtcatggaattctttaatctctgatcccaaatt 988725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 744 - 802
Target Start/End: Original strand, 12132320 - 12132378
Alignment:
Q  744 cgatgtgtttgcaagtcatggaattctctaatatctgatcccaaatttgtcaaaaagca 802  Q
    ||||| || ||||| || ||||||||||| ||||||||||||||||||| ||| |||||    
T  12132320 cgatgcgtatgcaaatcctggaattctctcatatctgatcccaaatttgccaagaagca 12132378  T

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Target: chr5 (Bit Score: 114; Significance: 2e-57; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 603 - 796
Target Start/End: Original strand, 11081304 - 11081497
Alignment:
Q  603 tctacgacagaggaaacaacttccatcaacaatcatctctcggttgtaccaagtaagcacctttgtgtgtccaccactcttccttccgacgtcattccag 702  Q
    ||||||| ||||||||||||||||||||||||||| |||||| ||||| || | ||||||||| ||||||| |||||||||||||||||  |||||| ||    
T  11081304 tctacgatagaggaaacaacttccatcaacaatcacctctcgattgtatcaggaaagcaccttcgtgtgtctaccactcttccttccgatctcattctag 11081403  T
Q  703 aaatcttatataggctaccggtcaagttcatccttcgattccgatgtgtttgcaagtcatggaattctctaatatctgatcccaaatttgtcaa 796  Q
    ||||| ||| |||| ||||||| ||||||||||||||||||| ||||||||||||||| || |||||| ||||||||||||||||||| |||||    
T  11081404 aaatcctatgtaggttaccggttaagttcatccttcgattccaatgtgtttgcaagtcgtgaaattctttaatatctgatcccaaattcgtcaa 11081497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 676 - 790
Target Start/End: Complemental strand, 1428608 - 1428494
Alignment:
Q  676 ccactcttccttccgacgtcattccagaaatcttatataggctaccggtcaagttcatccttcgattccgatgtgtttgcaagtcatggaattctctaat 775  Q
    |||||||||||| |||| ||||| || ||||| |  |||||||||| || ||  || |||||| | |||||||  |||||||| |||| |||||||||||    
T  1428608 ccactcttcctttcgacatcatttcacaaatcctccataggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatgtaattctctaat 1428509  T
Q  776 atctgatcccaaatt 790  Q
      |||||| ||||||    
T  1428508 cactgatctcaaatt 1428494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 744 - 790
Target Start/End: Complemental strand, 23765043 - 23764997
Alignment:
Q  744 cgatgtgtttgcaagtcatggaattctctaatatctgatcccaaatt 790  Q
    |||||||| |||||||  |||||||||||||| ||||||||||||||    
T  23765043 cgatgtgtgtgcaagtggtggaattctctaatttctgatcccaaatt 23764997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 744 - 790
Target Start/End: Complemental strand, 23814891 - 23814845
Alignment:
Q  744 cgatgtgtttgcaagtcatggaattctctaatatctgatcccaaatt 790  Q
    |||||||| |||||||  |||||||||||||| ||||||||||||||    
T  23814891 cgatgtgtgtgcaagtggtggaattctctaatttctgatcccaaatt 23814845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 747 - 792
Target Start/End: Complemental strand, 31145188 - 31145143
Alignment:
Q  747 tgtgtttgcaagtcatggaattctctaatatctgatcccaaatttg 792  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  31145188 tgtgtttgcaagtcatggaattctcttatatctgatcccaaatttg 31145143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 678 - 790
Target Start/End: Original strand, 19727117 - 19727229
Alignment:
Q  678 actcttccttccgacgtcattccagaaatcttatataggctaccggtcaagttcatccttcgattccgatgtgtttgcaagtcatggaattctctaatat 777  Q
    |||||||||| |||  |||||||||||||  ||  ||||||||| || || ||| || | |  |||||||||||||||||||| | |||||||||||| |    
T  19727117 actcttcctttcgatctcattccagaaattctaagtaggctacccgtgaaattcctcttgcagttccgatgtgtttgcaagtcgttgaattctctaatct 19727216  T
Q  778 ctgatcccaaatt 790  Q
    |||||| ||||||    
T  19727217 ctgatcacaaatt 19727229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 713 - 796
Target Start/End: Complemental strand, 25611819 - 25611733
Alignment:
Q  713 taggctaccggtcaagttcatccttcgattccgatgtgtttgcaagtcatggaattctctaatatc---tgatcccaaatttgtcaa 796  Q
    |||||| |||||||||||| |||||| |||| | || || ||||||||||||||||||||||||||   ||||||||| ||||||||    
T  25611819 taggctcccggtcaagttcctccttcaattctgttgcgtctgcaagtcatggaattctctaatatcgaatgatcccaattttgtcaa 25611733  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 23976514 - 23976449
Alignment:
Q  166 atattaactatttttcatcaaactacatgtcattgttgtatatgtcaaaatattaaagttattatt 231  Q
    |||||||||||| |||   ||||||||||| | |||||||||||||||||||| ||||| ||||||    
T  23976514 atattaactattattcgctaaactacatgttagtgttgtatatgtcaaaatatgaaagtcattatt 23976449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 790
Target Start/End: Complemental strand, 22672916 - 22672879
Alignment:
Q  753 tgcaagtcatggaattctctaatatctgatcccaaatt 790  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  22672916 tgcaagtcatggaattctctaatctctgatcgcaaatt 22672879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 11372315 - 11372361
Alignment:
Q  185 aaactacatgtcattgttgtatatgtcaaaatattaaagttattatt 231  Q
    ||||||||||| | |||||||||||||||||||| ||||| ||||||    
T  11372315 aaactacatgttaatgttgtatatgtcaaaatataaaagtcattatt 11372361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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