View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3827_low_10 (Length: 407)
Name: NF3827_low_10
Description: NF3827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3827_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 57 - 399
Target Start/End: Original strand, 32380355 - 32380697
Alignment:
| Q |
57 |
tttatgtgtttgtttgactgttgttacgtaatcgtctctgaactaaggataacttcgtcggcatatcatcctgcccaattccaatttatgtaccggtgga |
156 |
Q |
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| T |
32380355 |
tttatgtgtttgcttgactattgttacgtaaccgtctctgaactaaggattacttcgtcggcagatcatcctgcccaattccaatttatgtaccggtgga |
32380454 |
T |
|
| Q |
157 |
tgcaggctgaaggaaaattctaatcatctttttatgtttgtgaacactttaggagtatatgannnnnnnnnnnncaatgacttattgcctgtttagtagc |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32380455 |
ggcaggctgaaggaaaattctaatcatctttttatgtttgtgaacactttaggagtatatgattttttgtttttcaatgacttattgcctgtttagtagc |
32380554 |
T |
|
| Q |
257 |
acggctgaaaagctaaacgcacgtctataggggctttcaccgctgtttttaaaagctccaattccaagctttagcagaaacgcggtttcgtaacgtggat |
356 |
Q |
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|||||||||||||||||| ||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
32380555 |
acggctgaaaagctaaacacacatctataggggcttccacagctgtttttaaaagctccaattccaagctttagcggaaacgcggtttcgtaacgtgggt |
32380654 |
T |
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| Q |
357 |
ttggtaagttcacccctagagcaaacacactattagaatctct |
399 |
Q |
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| T |
32380655 |
ttggtaagttcacccctagagcaaacacactattagaatctct |
32380697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 57 - 399
Target Start/End: Original strand, 32434310 - 32434652
Alignment:
| Q |
57 |
tttatgtgtttgtttgactgttgttacgtaatcgtctctgaactaaggataacttcgtcggcatatcatcctgcccaattccaatttatgtaccggtgga |
156 |
Q |
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| T |
32434310 |
tttatgtgtttgcttgactattgttacgtaaccgtctctgaactaaggattacttcgtcggcagatcatcctgcccaattccaatttatgtaccggtgga |
32434409 |
T |
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| Q |
157 |
tgcaggctgaaggaaaattctaatcatctttttatgtttgtgaacactttaggagtatatgannnnnnnnnnnncaatgacttattgcctgtttagtagc |
256 |
Q |
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| T |
32434410 |
ggcaggctgaaggaaaattctaatcatctttttatgtttgtgaacactttaggagtatatgattttttgtttttcaatgacttattgcctgtttagtagc |
32434509 |
T |
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| Q |
257 |
acggctgaaaagctaaacgcacgtctataggggctttcaccgctgtttttaaaagctccaattccaagctttagcagaaacgcggtttcgtaacgtggat |
356 |
Q |
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| T |
32434510 |
acggctgaaaagctaaacacacatctataggggcttccacagctgtttttaaaagctccaattccaagctttagcggaaacgcggtttcgtaacgtgggt |
32434609 |
T |
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| Q |
357 |
ttggtaagttcacccctagagcaaacacactattagaatctct |
399 |
Q |
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| T |
32434610 |
ttggtaagttcacccctagagcaaacacactattagaatctct |
32434652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 243 - 386
Target Start/End: Original strand, 50503515 - 50503658
Alignment:
| Q |
243 |
gcctgtttagtagcacggctgaaaagctaaacgcacgtctataggggctttcaccgctgtttttaaaagctccaattccaagctttagcagaaacgcggt |
342 |
Q |
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|||||||| ||| |||| |||||||| |||| || ||||| |||||||||||| || ||||||||||||| |||||||||||| | |||||||||||| |
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| T |
50503515 |
gcctgtttggtatcacgactgaaaagttaaatgcgtgtctagaggggctttcactgcaatttttaaaagctcaaattccaagcttcatcagaaacgcggt |
50503614 |
T |
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| Q |
343 |
ttcgtaacgtggatttggtaagttcacccctagagcaaacacac |
386 |
Q |
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| T |
50503615 |
ttctgaacgtgagtttggtaacttcaccgctaaagcaaacacac |
50503658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 388
Target Start/End: Complemental strand, 45078718 - 45078618
Alignment:
| Q |
288 |
ggctttcaccgctgtttttaaaagctccaattccaagctttagcagaaacgcggtttcgtaacgtggatttggtaagttcacccctagagcaaacacact |
387 |
Q |
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|||||||||||| |||||||||||||||||| |||||| |||||||||||| ||| | || || |||||||| |||| | ||| |||||||||||| |
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| T |
45078718 |
ggctttcaccgcaaattttaaaagctccaattctaagcttgagcagaaacgcgattttggaaaatgagtttggtaacttcatcgctaaagcaaacacact |
45078619 |
T |
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| Q |
388 |
a |
388 |
Q |
| |
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| T |
45078618 |
a |
45078618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 45077757 - 45077697
Alignment:
| Q |
286 |
ggggctttcaccgctgtttttaaaagctccaattccaagctttagcagaaacgcggtttcg |
346 |
Q |
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| T |
45077757 |
ggggctttcaccgcaaattttaaaagctccaattctaagcttaagcggaaacgcgatttcg |
45077697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 42759965 - 42760050
Alignment:
| Q |
133 |
aattccaatttatgtaccggtggatgcaggctgaaggaaaattctaatcatctttttatg-tttgtgaacactttaggagtatatg |
217 |
Q |
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|||||||||||||| | || ||||||| || | ||||||||||| || |||||||||| ||||||||||| || |||||||||| |
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| T |
42759965 |
aattccaatttatgcatcgatggatgcgggtgggaggaaaattctgttcttctttttatgttttgtgaacacattgggagtatatg |
42760050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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