View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3827_low_11 (Length: 389)
Name: NF3827_low_11
Description: NF3827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3827_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 12 - 374
Target Start/End: Original strand, 47419319 - 47419680
Alignment:
| Q |
12 |
agaacctgtgttggtttttgtctacaagaaaaaggacggttcttagcataacgttgaaacctatctctaaccaccttaagaaaaaacatctattctacct |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47419319 |
agaacctgtgttggtttttgtctacaagaaaaaggacggttcttagcataacgttgaaacctatctctaaccaccttaagaaaaaacatctattctacct |
47419418 |
T |
|
| Q |
112 |
acctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttgggtatttcatctctct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47419419 |
acctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttgggcatttcatctctct |
47419518 |
T |
|
| Q |
212 |
at-acgaatgacaacaaaaaattgacaaaaccaaaaacttagtaatatgaacaagccttgcacaacaaactttagtagtttagcacggaagagatggaaa |
310 |
Q |
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|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47419519 |
ataacgaatgacaac--aaaattgacaaaaccaaaaacttagtaatatgaacaagccttgcacaacaaactttagtagtttagcacggaagagatggaaa |
47419616 |
T |
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| Q |
311 |
aaggacatgatagtgaaactggattgagaaacccaccttcaatttatcaaataaagtttgaagt |
374 |
Q |
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| T |
47419617 |
aaggacatgatagtgaaactggattgagaaacccaccttcaatttattaaataaagtttgaagt |
47419680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 374
Target Start/End: Original strand, 47390956 - 47391315
Alignment:
| Q |
12 |
agaacctgtgttggtttttgtctacaagaaaaaggacggttcttagcataacgttgaaacctatctctaaccaccttaagaaaaaacatctattctacct |
111 |
Q |
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||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| ||| |
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| T |
47390956 |
agaacctgtattggtttttgtctgcaataaaaaggatggttcttagcataacgttgaaatctatctctaaccaccttaggaaaaatcatctattctgcct |
47391055 |
T |
|
| Q |
112 |
acctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttgggtatttcatctctct |
211 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47391056 |
acctgttgttgcacttttgttaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttaggtatttcatctctct |
47391155 |
T |
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| Q |
212 |
atacgaatgacaacaaaaaattgacaaaaccaaaaacttagtaatatgaacaagccttgcacaacaaactttagtagtttagcacggaagagatggaaaa |
311 |
Q |
| |
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| || ||||||||| |||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | ||| |||||| |
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| T |
47391156 |
agacaaatgacaac--gaaattgacaaaatgaaaaacttagaaatatgaaaaagccttgcacaacaaactttagtagtttagcacggcatagagggaaaa |
47391253 |
T |
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| Q |
312 |
aggacatgatagtgaaactggattgagaaacccaccttcaatttatcaaataaagtttgaagt |
374 |
Q |
| |
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||||||||||| ||||||||| |||||||||||||||||||||| | |||||||||||||||| |
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| T |
47391254 |
aggacatgata-tgaaactggtttgagaaacccaccttcaatttgttaaataaagtttgaagt |
47391315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 374
Target Start/End: Original strand, 47421775 - 47422152
Alignment:
| Q |
12 |
agaacctgtgttggtttttgtctacaagaaaaaggacggttcttagcataacgttgaaacctatctctaaccaccttaagaaaaaacat----------- |
100 |
Q |
| |
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||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| |||| |
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| T |
47421775 |
agaacctgtattggtttttgt----aagaaaaaggatggttcttagcataacgttgaaatctatctttaaccaccttaagaaaacacattgtaagataaa |
47421870 |
T |
|
| Q |
101 |
---------ctattctacctacctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttc |
191 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47421871 |
gtaaactatctattctacctacctgttgttgcacttttgctaatgctatcctaagcatcggatcccccacaatccctttcataagccgtacaaaatgttc |
47421970 |
T |
|
| Q |
192 |
tttgggtatttcatctctctata-cgaatgacaacaaaaaattgacaaaaccaaaaacttagtaatatgaacaagccttgcacaacaaactttagtagtt |
290 |
Q |
| |
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||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47421971 |
tttcggtatttcatctctctataacgaatgacaacaaaa--ttgacaaaaccaaaaacttagtgatatgaacaagccttgcacaacaaactttagtagtt |
47422068 |
T |
|
| Q |
291 |
tagcacggaagagatggaaaaaggacatgatagtgaaactggattgagaaacccaccttcaatttatcaaataaagtttgaagt |
374 |
Q |
| |
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||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
47422069 |
aagcacggaagagagggaaaaaggacatgatggtgaaactggtttgagaaacccaccttcaatttattaaataaagtttgaagt |
47422152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 105 - 374
Target Start/End: Original strand, 47408183 - 47408455
Alignment:
| Q |
105 |
tctacctacctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttgggtatttca |
204 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||| |||||| |||||||||| ||||||||||||||| ||||| |||| | || ||||||| ||||||| |
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| T |
47408183 |
tctacctacctgttgctgcacttctgttaatgctttcctaatcatctgatcctccacaatccctttcaaaagccttacacactgatctttggatatttca |
47408282 |
T |
|
| Q |
205 |
tctctcta-tacgaatgacaacaaaaaattgacaaaaccaaaaacttagtaatatgaacaagccttgcacaacaaact----ttagtagtttagcacgga |
299 |
Q |
| |
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|||||||| || ||||||||| |||||||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||||||||||| | |
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| T |
47408283 |
tctctctagaacaaatgacaac--aaaattgacaaaaccaaaaatttagtaatatgaaaaagcctcgcacaacaaactttagttagtagtttagcacaaa |
47408380 |
T |
|
| Q |
300 |
agagatggaaaaaggacatgatagtgaaactggattgagaaacccaccttcaatttatcaaataaagtttgaagt |
374 |
Q |
| |
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||| | ||||||| |||||||||| ||||||| ||||||||| ||||||||||| || | ||||||||||||| |
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| T |
47408381 |
agaaagggaaaaaagacatgatagccaaactggtttgagaaacagaccttcaatttttccattaaagtttgaagt |
47408455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 98 - 261
Target Start/End: Original strand, 47424609 - 47424771
Alignment:
| Q |
98 |
catctattctacctacctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttggg |
197 |
Q |
| |
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|||||| ||||| ||||||||| ||||||| || ||||| | |||||||||| | ||||||||| |||||||||||||||||||| || | ||||| |
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| T |
47424609 |
catctaatctacgtacctgttggtgcacttctgttaatgttgatataagcatctgcttccccacaatgcctttcataagccgtacaaattgatgtttgga |
47424708 |
T |
|
| Q |
198 |
tatttcatctctcta-tacgaatgacaacaaaaaattgacaaaaccaaaaacttagtaatatgaa |
261 |
Q |
| |
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| |||||||||||| || ||||||| | ||||||||||| || ||||||||||||| ||||| |
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|
| T |
47424709 |
cacttcatctctctagaacaaatgacatc--aaaattgacaagacaaaaaacttagtaacatgaa |
47424771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 374
Target Start/End: Original strand, 47425227 - 47425287
Alignment:
| Q |
314 |
gacatgatagtgaaactggattgagaaacccaccttcaatttatcaaataaagtttgaagt |
374 |
Q |
| |
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|||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||| |
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| T |
47425227 |
gacatgatagtgaaactgatttgagaaacacaccttcaatttgtcaaataaagtttgaagt |
47425287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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