View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3827_low_12 (Length: 381)

Name: NF3827_low_12
Description: NF3827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3827_low_12
NF3827_low_12
[»] chr5 (6 HSPs)
chr5 (1-374)||(8334167-8334540)
chr5 (2-77)||(42573888-42573963)
chr5 (2-74)||(14675009-14675081)
chr5 (2-77)||(5963391-5963466)
chr5 (4-75)||(41059608-41059679)
chr5 (15-77)||(28776862-28776923)
[»] chr3 (3 HSPs)
chr3 (2-77)||(35127480-35127555)
chr3 (1-77)||(30574020-30574096)
chr3 (15-77)||(35959588-35959649)
[»] chr2 (2 HSPs)
chr2 (3-77)||(1985453-1985527)
chr2 (13-77)||(26626763-26626826)
[»] chr4 (5 HSPs)
chr4 (1-77)||(11389413-11389488)
chr4 (2-75)||(42641742-42641815)
chr4 (15-77)||(50298417-50298479)
chr4 (2-79)||(17751231-17751308)
chr4 (15-76)||(26883882-26883943)
[»] chr1 (3 HSPs)
chr1 (3-77)||(48064195-48064269)
chr1 (47-77)||(35925591-35925621)
chr1 (2-75)||(37841886-37841959)
[»] chr8 (3 HSPs)
chr8 (28-76)||(31916468-31916516)
chr8 (21-76)||(2840246-2840301)
chr8 (21-76)||(2844933-2844988)
[»] chr7 (2 HSPs)
chr7 (28-76)||(7612346-7612394)
chr7 (15-75)||(46139831-46139890)
[»] chr6 (1 HSPs)
chr6 (1-77)||(31686552-31686628)


Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 8334540 - 8334167
Alignment:
Q  1 tttatagaaatggtttatagataagcacttatcatgataagagctaatgacataagctgcaaattaagttgtttatcaactaaagcatacatgctggttg 100  Q
    ||||| ||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8334540 tttattgaaatagtttatagataagcgcgtatcatgataagagctaatgacataagctgcaaattaagttgtttatcaactaaagcatacatgctggttg 8334441  T
Q  101 taaacgaaactgttcaaaaagtatgacattatgcaatgatttgagaaaagaggatattttgataggagtcttgtttttaaaatattctgttaagtttttc 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8334440 taaatgaaactgttcaaaaagtatgacattatgcaatgatttgagaaaggaggatattttgataggagtcttgtttttaaaatattctgttaagtttttc 8334341  T
Q  201 acgagtgtagaatctgtttatccactttacttaacacattttaatttggtctattcttcttatttgtatgctttataaattcactgcaggatcaccgcaa 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8334340 acgagtgtagaatctgtttatccactttacgtaacacattttaatttggtctattcttcttatttgtatgctttataaattcactgcaggatcaccgcaa 8334241  T
Q  301 attccaacagcgttactatgagttccttgaccattttcggattccagatggaccggtgtttttggtgatctgtg 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8334240 attccaacagcgttactatgagttccttgaccattttcggattccagatggaccggtgtttttggtgatctgtg 8334167  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 42573888 - 42573963
Alignment:
Q  2 ttatagaaatggtttatagataagcacttatcatgataagagctaatgacataagctgcaaattaagttgtttatc 77  Q
    |||||||||| | ||||| |||||| |||||||||||||| ||| | |  ||||||||||||||||| ||||||||    
T  42573888 ttatagaaatagcttatacataagcgcttatcatgataagcgctcaggctataagctgcaaattaagctgtttatc 42573963  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 14675009 - 14675081
Alignment:
Q  2 ttatagaaatggtttatagataagcacttatcatgataagagctaatgacataagctgcaaattaagttgttt 74  Q
    |||||||||| | || || ||||||||||||||||||||    | ||| ||||||||||||||||||||||||    
T  14675009 ttatagaaatagcttctacataagcacttatcatgataactatttatgccataagctgcaaattaagttgttt 14675081  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 5963391 - 5963466
Alignment:
Q  2 ttatagaaatggtttatagataagcacttatcatgataagagctaatgacataagctgcaaattaagttgtttatc 77  Q
    |||||||||| |||| || |||||| |||||||||||||  ||| |||  ||||  ||||||||||||||||||||    
T  5963391 ttatagaaatagtttgtacataagcgcttatcatgataaatgcttatgctataaattgcaaattaagttgtttatc 5963466  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 41059679 - 41059608
Alignment:
Q  4 atagaaatggtttatagataagcacttatcatgataagagctaatgacataagctgcaaattaagttgttta 75  Q
    |||||||| | ||||  ||||||| ||||||||||||| ||| || | ||||||| ||||||||||||||||    
T  41059679 atagaaatagcttatgcataagcaattatcatgataagtgcttatcatataagctacaaattaagttgttta 41059608  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 28776923 - 28776862
Alignment:
Q  15 ttatagataagcacttatcatgataagagctaatgacataagctgcaaattaagttgtttatc 77  Q
    ||||| ||||||||||||||||||||| ||| | |  |||||||||||| |||||||||||||    
T  28776923 ttatacataagcacttatcatgataagtgcttaggctataagctgcaaa-taagttgtttatc 28776862  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 35127480 - 35127555
Alignment:
Q  2 ttatagaaatggtttatagataagcacttatcatgataagagctaatgacataagctgcaaattaagttgtttatc 77  Q
    |||||||||| |  |||| ||||||||||||||||||||||||| |||  ||||||||||||| ||| ||||||||    
T  35127480 ttatagaaatagcctatacataagcacttatcatgataagagcttatggtataagctgcaaatgaagctgtttatc 35127555  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 30574020 - 30574096
Alignment:
Q  1 tttatagaaatggtttatagataagcacttatcatgataagagctaatgacataagctgcaaattaagttgtttatc 77  Q
    ||||||||||| | ||||| |||||| |||||||||||||  ||| |||| ||||||||||||||| | ||||||||    
T  30574020 tttatagaaatagcttatacataagcgcttatcatgataaatgcttatgatataagctgcaaattatggtgtttatc 30574096  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 35959588 - 35959649
Alignment:
Q  15 ttatagataagcacttatcatgataagagctaatgacataagctgcaaattaagttgtttatc 77  Q
    ||||| |||||| ||||||||||||||||||  ||| |||||||||||| |||| ||||||||    
T  35959588 ttatacataagctcttatcatgataagagcttgtgatataagctgcaaa-taagctgtttatc 35959649  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 1985527 - 1985453
Alignment:
Q  3 tatagaaatggtttatagataagcacttatcatgataagagctaatgacataagctgcaaattaagttgtttatc 77  Q
    ||||||||||||||||| | ||||||||||||||||||| ||| |||| | ||||||  | ||||||||||||||    
T  1985527 tatagaaatggtttatacaaaagcacttatcatgataagcgcttatgataaaagctgtgatttaagttgtttatc 1985453  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 26626826 - 26626763
Alignment:
Q  13 gtttatagataagcacttatcatgataagagctaatgacataagctgcaaattaagttgtttatc 77  Q
    ||||||| ||||| | ||||||||||||||||| |||  |||||||||||| |||||||||||||    
T  26626826 gtttatacataagtatttatcatgataagagcttatgctataagctgcaaa-taagttgtttatc 26626763  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 11389488 - 11389413
Alignment:
Q  1 tttatagaaatggtttatagataagcacttatcatgataagagctaatgacataagctgcaaattaagttgtttatc 77  Q
    |||||||||||  |||||| |||||||||||||||||||||  || |||| |||| ||||||| |||||||||||||    
T  11389488 tttatagaaataatttatacataagcacttatcatgataagcactcatgatataaactgcaaa-taagttgtttatc 11389413  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 42641742 - 42641815
Alignment:
Q  2 ttatagaaatggtttatagataagcacttatcatgataagagctaatgacataagctgcaaattaagttgttta 75  Q
    |||| ||||| | ||||| |||| |||||||||||||||| ||| |||  ||||||||||||||||| ||||||    
T  42641742 ttatggaaatagcttatacataaacacttatcatgataagtgcttatgtaataagctgcaaattaagctgttta 42641815  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 50298479 - 50298417
Alignment:
Q  15 ttatagataagcacttatcatgataagagctaatgacataagctgcaaattaagttgtttatc 77  Q
    ||||| ||||||| ||||||||||||| | | |||  ||||||| ||||||||||||||||||    
T  50298479 ttatacataagcatttatcatgataagtgtttatgctataagcttcaaattaagttgtttatc 50298417  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 17751231 - 17751308
Alignment:
Q  2 ttatagaaatggtttatagataagcacttatcatgataagagctaatgacataagctgcaaattaagttgtttatcaa 79  Q
    |||||||||| | ||||| |||||| |||||||| | ||| ||| |||  ||||||||||| |||||||| |||||||    
T  17751231 ttatagaaatagcttataaataagcgcttatcattacaagtgcttatgctataagctgcaatttaagttgattatcaa 17751308  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 26883943 - 26883882
Alignment:
Q  15 ttatagataagcacttatcatgataagagctaatgacataagctgcaaattaagttgtttat 76  Q
    ||||| |||| ||||||||| |||||| ||| |||  ||| |||||||||||||||||||||    
T  26883943 ttatacataatcacttatcaagataagcgcttatgctatatgctgcaaattaagttgtttat 26883882  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 48064269 - 48064195
Alignment:
Q  3 tatagaaatggtttatagataagcacttatcatgataagagctaatgacataagctgcaaattaagttgtttatc 77  Q
    ||||||||| |||| || || || ||| ||||||||||| ||| |||  ||||||||||||||||||||||||||    
T  48064269 tatagaaattgtttctacattaggactaatcatgataagggcttatgctataagctgcaaattaagttgtttatc 48064195  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 77
Target Start/End: Complemental strand, 35925621 - 35925591
Alignment:
Q  47 atgacataagctgcaaattaagttgtttatc 77  Q
    |||||||||||||||||||||||||||||||    
T  35925621 atgacataagctgcaaattaagttgtttatc 35925591  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 37841959 - 37841886
Alignment:
Q  2 ttatagaaatggtttatagataagcacttatcatgataagagctaatgacataagctgcaaattaagttgttta 75  Q
    |||||| ||| | ||||| || || ||||||||||||||| ||| |||  || |||||||||||||||||||||    
T  37841959 ttataggaatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta 37841886  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 31916516 - 31916468
Alignment:
Q  28 cttatcatgataagagctaatgacataagctgcaaattaagttgtttat 76  Q
    |||||||||||||| ||| ||| |||||||||||||| |||||||||||    
T  31916516 cttatcatgataagcgcttatgccataagctgcaaatgaagttgtttat 31916468  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 2840301 - 2840246
Alignment:
Q  21 ataagcacttatcatgataagagctaatgacataagctgcaaattaagttgtttat 76  Q
    |||||||||||||||||||||  || |||  |||||||||||| ||||||||||||    
T  2840301 ataagcacttatcatgataagcacttatgctataagctgcaaaataagttgtttat 2840246  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 2844988 - 2844933
Alignment:
Q  21 ataagcacttatcatgataagagctaatgacataagctgcaaattaagttgtttat 76  Q
    |||||||||||||||||||||  || |||  |||||||||||| ||||||||||||    
T  2844988 ataagcacttatcatgataagcacttatgctataagctgcaaaataagttgtttat 2844933  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 7612394 - 7612346
Alignment:
Q  28 cttatcatgataagagctaatgacataagctgcaaattaagttgtttat 76  Q
    |||||||||||||| ||| |||  |||||||||||||||||||||||||    
T  7612394 cttatcatgataagtgcttatgctataagctgcaaattaagttgtttat 7612346  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 46139890 - 46139831
Alignment:
Q  15 ttatagataagcacttatcatgataagagctaatgacataagctgcaaattaagttgttta 75  Q
    |||||||||| |||||||||||||||| |||  ||  |||||||||||| |||||||||||    
T  46139890 ttatagataatcacttatcatgataagtgcttgtgttataagctgcaaa-taagttgttta 46139831  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 31686552 - 31686628
Alignment:
Q  1 tttatagaaatggtttatagataagcacttatcatgataagagctaatgacataagctgcaaattaagttgtttatc 77  Q
    ||||| ||||| | ||||| |||||||||||||| |||||| ||| |||   || |||||||||||||||| |||||    
T  31686552 tttatcgaaatagcttatacataagcacttatcacgataagcgcttatgctgtatgctgcaaattaagttgattatc 31686628  T

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