View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3827_low_16 (Length: 249)

Name: NF3827_low_16
Description: NF3827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3827_low_16
NF3827_low_16
[»] chr7 (15 HSPs)
chr7 (1-239)||(29922090-29922322)
chr7 (53-239)||(29476437-29476623)
chr7 (96-241)||(29881086-29881231)
chr7 (49-239)||(29106591-29106781)
chr7 (104-239)||(29899206-29899341)
chr7 (109-238)||(29920141-29920270)
chr7 (53-239)||(29454200-29454386)
chr7 (98-239)||(29867071-29867212)
chr7 (104-239)||(29885086-29885221)
chr7 (98-239)||(29895298-29895439)
chr7 (98-197)||(29859286-29859385)
chr7 (99-199)||(29431135-29431235)
chr7 (136-195)||(18953046-18953105)
chr7 (136-195)||(18983093-18983152)
chr7 (136-195)||(18997739-18997798)
[»] chr1 (7 HSPs)
chr1 (99-239)||(4366592-4366732)
chr1 (123-197)||(4570780-4570854)
chr1 (104-194)||(21855525-21855615)
chr1 (133-189)||(4016919-4016974)
chr1 (112-195)||(10218825-10218908)
chr1 (122-227)||(39379170-39379275)
chr1 (112-239)||(17560870-17560997)
[»] chr4 (4 HSPs)
chr4 (104-239)||(1686382-1686517)
chr4 (104-239)||(3565582-3565717)
chr4 (122-239)||(3557582-3557699)
chr4 (107-189)||(3561105-3561187)
[»] chr3 (1 HSPs)
chr3 (107-239)||(3625575-3625707)
[»] chr5 (1 HSPs)
chr5 (104-194)||(24331041-24331131)
[»] scaffold0242 (2 HSPs)
scaffold0242 (53-203)||(13863-14013)
scaffold0242 (53-203)||(22698-22848)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 29922322 - 29922090
Alignment:
Q  1 agtgatcatattcatagtgtacattgtatgtgtgatggtgtttacgtaagtggcacttttaactggttggctatccacaatgaccttccctatcgtgtta 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29922322 agtgatcatattcatagtgaacattgtatgtgtgatggtgtttacgtaagtggcacttttaactggttggctatccacaacgaccttccctatcgtgtta 29922223  T
Q  101 agaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatc 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||    
T  29922222 agaatattacagttgaacattttgttatcgtttctcttgatttagggacggagacatacaatcaatatctgttgcctc------ttgatgaagtgccatc 29922129  T
Q  201 tgcagaaccaaccgttggtgtgttggggggctgcctttg 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29922128 tgcagaaccaaccgttggtgtgttggggggctgcctttg 29922090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 239
Target Start/End: Complemental strand, 29476623 - 29476437
Alignment:
Q  53 gcacttttaactggttggctatccacaatgaccttccctatcgtgttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacgga 152  Q
    ||||| |||| ||||||||||| ||||||||| ||  ||||  | |||||||| ||| |||||| || |||||||| || || || |||||||| || ||    
T  29476623 gcactcttaattggttggctattcacaatgactttgactatgatattaagaatcttagagttgagcagtttgttattgtttcactcgatttaggaactga 29476524  T
Q  153 gacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgtgttggggggctgcctttg 239  Q
    ||||||||||||||| |   ||||||||| |||||||||| ||||||||||    ||||  |||| |||||||||||||| ||||||    
T  29476523 gacatacaatcaataccgtctgcctcgtgattttgatgaaatgccatctgccctgccaattgttgctgtgttggggggcttcctttg 29476437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 241
Target Start/End: Original strand, 29881086 - 29881231
Alignment:
Q  96 tgttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtg 195  Q
    ||||||| ||||||| ||||| || |||||||| || || |||||||| ||||| |||||||||||||||||||   ||||||   |||||||||| |||    
T  29881086 tgttaaggatattactgttgaccaatttgttattgtttcacttgatttggggactgagacatacaatcaatatcgactgcctccgagttttgatgaggtg 29881185  T
Q  196 ccatctgcagaaccaaccgttggtgtgttggggggctgcctttgct 241  Q
    ||| |||||  |||||  ||||||||||||| || |||||||||||    
T  29881186 ccacctgcacgaccaattgttggtgtgttggaggactgcctttgct 29881231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 239
Target Start/End: Original strand, 29106591 - 29106781
Alignment:
Q  49 agtggcacttttaactggttggctatccacaatgaccttccctatcgtgttaagaatattacagttgaacattttgttatcgtgtctcttgatttaggga 148  Q
    ||||||||| |||||||||||||||| ||||||  |||    |||  | || || ||||||||||||  || |||||||| || || |||||||   |||    
T  29106591 agtggcactcttaactggttggctattcacaatagcctcgattataattttgaggatattacagttggtcaatttgttattgtttcacttgattggagga 29106690  T
Q  149 cggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgtgttggggggctgcctttg 239  Q
     ||||||||||||||||||   |||||||||||| |||||||||||||| ||   |   ||||| ||||||||||||||||||||||||||    
T  29106691 tggagacatacaatcaatacaagttgcctcgtgggtttgatgaagtgccgtcaaaacggccaacagttggtgtgttggggggctgcctttg 29106781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 29899206 - 29899341
Alignment:
Q  104 atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc 203  Q
    |||| |||||||  || |||||||| || || |||||||| | |||||||||||| || || ||  ||||||||| ||| |||||||||||||| ||||     
T  29899206 atatcacagttgggcaatttgttattgtttcacttgatttggagacggagacatagaagcagtacatgttgcctcctgggtttgatgaagtgccgtctgt 29899305  T
Q  204 agaaccaaccgttggtgtgttggggggctgcctttg 239  Q
     || |||||  |||||||||||||||||||||||||    
T  29899306 ggagccaacatttggtgtgttggggggctgcctttg 29899341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 238
Target Start/End: Complemental strand, 29920270 - 29920141
Alignment:
Q  109 acagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaac 208  Q
    ||||||||||| |||||||| || |||||  |||| ||||| ||||| ||| |||| ||| |  |||| ||||| |||||||||||||||  || |||||    
T  29920270 acagttgaacaatttgttattgtttctctccatttggggacagagacctaccatcagtatttactgccccgtggatttgatgaagtgccacttgtagaac 29920171  T
Q  209 caaccgttggtgtgttggggggctgccttt 238  Q
    ||||  ||||||||||||| ||||||||||    
T  29920170 caactcttggtgtgttgggaggctgccttt 29920141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 239
Target Start/End: Complemental strand, 29454386 - 29454200
Alignment:
Q  53 gcacttttaactggttggctatccacaatgaccttccctatcgtgttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacgga 152  Q
    ||||| |||| ||||||||||| |||||| || | | ||||  |  ||||||||| |||||||| || ||||||||  | || |||||||| ||||| ||    
T  29454386 gcactcttaattggttggctattcacaatcacttgcactataatagtaagaatatcacagttgagcagtttgttattatttcacttgatttggggactga 29454287  T
Q  153 gacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgtgttggggggctgcctttg 239  Q
    ||| |||||| | || |  |||||||||| ||||||||| |||||| ||| ||  ||||| |||||||| ||||||||  |||||||    
T  29454286 gacgtacaataagtaccaattgcctcgtgattttgatgaggtgccacctgaagctccaacggttggtgttttggggggaagcctttg 29454200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 29867071 - 29867212
Alignment:
Q  98 ttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcc 197  Q
    ||||| ||||||| ||||| || |||||||| || || |||||||| ||||| |||| |||||||||||| |   ||||||   |||||||||| |||||    
T  29867071 ttaaggatattactgttgaccagtttgttattgtttcacttgatttggggactgagaaatacaatcaataccgactgcctccaagttttgatgaggtgcc 29867170  T
Q  198 atctgcagaaccaaccgttggtgtgttggggggctgcctttg 239  Q
     |||||| | || |  |||||||||||||||| |||||||||    
T  29867171 gtctgcatatcctattgttggtgtgttgggggactgcctttg 29867212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 29885086 - 29885221
Alignment:
Q  104 atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc 203  Q
    |||| |||||||  || |||||||| || || |||||||| | |||||||||||| || || ||  ||||||||| ||| |||||||||||||| ||||     
T  29885086 atatcacagttgggcaatttgttattgtttcacttgatttggagacggagacatagaagcagtacatgttgcctcctgggtttgatgaagtgccgtctgt 29885185  T
Q  204 agaaccaaccgttggtgtgttggggggctgcctttg 239  Q
     || |||||  |||||||| | ||||||||||||||    
T  29885186 ggagccaacatttggtgtgctagggggctgcctttg 29885221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 29895298 - 29895439
Alignment:
Q  98 ttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcc 197  Q
    |||||||| ||| |||||| || |||||||| || || |||||  | || |||||||| ||||||||||| ||| ||||||  ||||||||||| |||||    
T  29895298 ttaagaatcttagagttgagcaatttgttattgtttcgcttgagctgggaacggagacttacaatcaatacctgctgcctctgggttttgatgaggtgcc 29895397  T
Q  198 atctgcagaaccaaccgttggtgtgttggggggctgcctttg 239  Q
      || || ||||||| ||| |||| ||||| ||||| |||||    
T  29895398 ccctacacaaccaacggttagtgtcttgggtggctgtctttg 29895439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 29859286 - 29859385
Alignment:
Q  98 ttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcc 197  Q
    ||||| ||||||| || ||||| |||||||| || || |||||||| ||||  || ||||||||||||||  | ||||||||||| |||||||| |||||    
T  29859286 ttaaggatattactgtcgaacaatttgttattgtttcacttgatttggggagtgaaacatacaatcaatacttattgcctcgtgggtttgatgaggtgcc 29859385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 29431235 - 29431135
Alignment:
Q  99 taagaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcca 198  Q
    |||| |||||||| |||| || ||||||||  | || |||||||| ||||| |||||||| ||| | ||  |||||||||||| ||||||||| ||||||    
T  29431235 taaggatattacaattgagcagtttgttattctttcgcttgatttggggactgagacatataataagtacttgttgcctcgtgattttgatgaggtgcca 29431136  T
Q  199 t 199  Q
    |    
T  29431135 t 29431135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 18953105 - 18953046
Alignment:
Q  136 cttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtg 195  Q
    ||||||||  ||||||||||||||||||||| |||  | |||| ||||||||||||||||    
T  18953105 cttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtg 18953046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 18983152 - 18983093
Alignment:
Q  136 cttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtg 195  Q
    ||||||||  ||||||||||||||||||||| |||  | |||| ||||||||||||||||    
T  18983152 cttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtg 18983093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 18997798 - 18997739
Alignment:
Q  136 cttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtg 195  Q
    ||||||||  ||||||||||||||||||||| |||  | |||| ||||||||||||||||    
T  18997798 cttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtg 18997739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 239
Target Start/End: Complemental strand, 4366732 - 4366592
Alignment:
Q  99 taagaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcca 198  Q
    |||||||||||| ||||| || |||||||| || || |||||| | || || |||||||||||||||||  || |||||||||||||||| |||||||||    
T  4366732 taagaatattaccgttgagcaatttgttattgtttcgcttgatctgggtacagagacatacaatcaatacttgctgcctcgtggttttgaagaagtgcca 4366633  T
Q  199 tctgcagaaccaaccgttggtgtgttggggggctgcctttg 239  Q
     || | |||||||| |||||||||||||||| |||||||||    
T  4366632 cctactgaaccaacagttggtgtgttgggggactgcctttg 4366592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 4570780 - 4570854
Alignment:
Q  123 tgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcc 197  Q
    |||||| || ||||||||||| | |||||||||||||||||||||  || ||||||||||  |||||||||||||    
T  4570780 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgcc 4570854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 21855615 - 21855525
Alignment:
Q  104 atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagt 194  Q
    ||||||| ||||| || ||||| || || ||||||||||| | |||||||||||||||||||||  |  |||||| |||||||||||||||    
T  21855615 atattactgttgaccagtttgtgattgtttctcttgatttggagacggagacatacaatcaatacattatgcctcatggttttgatgaagt 21855525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 4016974 - 4016919
Alignment:
Q  133 tctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgat 189  Q
    ||||||||||| |||||||||||||||||||||||  || |||||||||||||||||    
T  4016974 tctcttgattt-gggacggagacatacaatcaatacatggtgcctcgtggttttgat 4016919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 10218825 - 10218908
Alignment:
Q  112 gttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtg 195  Q
    |||||||| | |||||| || ||||||||||| | |||||||||||||||||||||  || ||||  ||||||||||| |||||    
T  10218825 gttgaacactctgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgccctgtggttttgatcaagtg 10218908  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 227
Target Start/End: Complemental strand, 39379275 - 39379170
Alignment:
Q  122 ttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgt 221  Q
    ||||||| || || |||||||| ||||| || |||||||| || |||| ||||||| | ||||||||||| || || |||||||| ||||   |||||||    
T  39379275 ttgttattgtttcacttgatttggggactgaaacatacaaccagtatcggttgccttggggttttgatgaggttccgtctgcagagccaagttttggtgt 39379176  T
Q  222 gttggg 227  Q
    ||||||    
T  39379175 gttggg 39379170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 17560997 - 17560870
Alignment:
Q  112 gttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaa 211  Q
    |||||||| |||| ||| || || ||||||||  |||| |||||||||||| | ||  | |||||||||| |||||| || |||||| |   ||||||||    
T  17560997 gttgaacaatttggtattgtttcgcttgatttgaggactgagacatacaattagtacttattgcctcgtgattttgacgaggtgccaaccatagaaccaa 17560898  T
Q  212 ccgttggtgtgttggggggctgcctttg 239  Q
    |  ||||||||||||||| ||| |||||    
T  17560897 cttttggtgtgttgggggactgtctttg 17560870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 239
Target Start/End: Complemental strand, 1686517 - 1686382
Alignment:
Q  104 atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc 203  Q
    ||||||| ||||||||  ||||||| || || ||| |||| ||||| ||||||||||||||||||| ||||||||  ||||||| ||| |||||   |      
T  1686517 atattactgttgaacagattgttattgtttcacttaatttggggactgagacatacaatcaatatcggttgcctcagggttttgctgaggtgccgcttat 1686418  T
Q  204 agaaccaaccgttggtgtgttggggggctgcctttg 239  Q
    ||| ||||| |||||||||||||||| |||||||||    
T  1686417 agagccaactgttggtgtgttgggggactgcctttg 1686382  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 3565582 - 3565717
Alignment:
Q  104 atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc 203  Q
    ||||||| ||||| ||  ||||||| || || |||||||||||||| ||| ||||||| ||||||| ||||||||  ||||||||||| || ||  |||     
T  3565582 atattactgttgagcagattgttattgtttcacttgatttagggactgagtcatacaaacaatatcggttgcctctgggttttgatgaggttccgactga 3565681  T
Q  204 agaaccaaccgttggtgtgttggggggctgcctttg 239  Q
     || ||||| |||||||||||| ||| |||||||||    
T  3565682 ggagccaactgttggtgtgttgagggactgcctttg 3565717  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 3557582 - 3557699
Alignment:
Q  122 ttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgt 221  Q
    ||||||| || || |||||||| ||||| ||| ||||||| ||||||| ||||||||| |||||||||||  ||||  |||  || ||||||||||||||    
T  3557582 ttgttattgtttcacttgatttggggactgagtcatacaaccaatatcggttgcctcggggttttgatgagatgccgactgaggagccaaccgttggtgt 3557681  T
Q  222 gttggggggctgcctttg 239  Q
    |||| ||| ||| |||||    
T  3557682 gttgagggactgtctttg 3557699  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 3561187 - 3561105
Alignment:
Q  107 ttacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgat 189  Q
    |||||||||| || |||||||| || || |||||| | || || |||||||||||||||||| |||||||||| |||||||||    
T  3561187 ttacagttgagcagtttgttattgtttcgcttgatctgggaactgagacatacaatcaatatttgttgcctcggggttttgat 3561105  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 239
Target Start/End: Original strand, 3625575 - 3625707
Alignment:
Q  107 ttacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcaga 206  Q
    |||| ||||| || |||||||| || || |||||||| ||||| |||||||||||||| |||  | |||||||||| |||||| | |||||  ||  |||    
T  3625575 ttactgttgagcaatttgttattgtttcacttgatttggggactgagacatacaatcactattggctgcctcgtggatttgataaggtgcctcctataga 3625674  T
Q  207 accaaccgttggtgtgttggggggctgcctttg 239  Q
    |||||  |||||||||||||||| |||||||||    
T  3625675 accaaatgttggtgtgttgggggactgcctttg 3625707  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 24331131 - 24331041
Alignment:
Q  104 atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagt 194  Q
    ||||||| ||||| || ||||| || || ||||||||||| | |||||||||||||||||||||  |  |||||| |||||||||||||||    
T  24331131 atattactgttgaccagtttgtgattgtttctcttgatttggagacggagacatacaatcaatacattatgcctcatggttttgatgaagt 24331041  T

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Target: scaffold0242 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 203
Target Start/End: Complemental strand, 14013 - 13863
Alignment:
Q  53 gcacttttaactggttggctatccacaatgaccttccctatcgtgttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacgga 152  Q
    ||||| |||| ||||||||| | ||||||||| ||  ||||  | |||||||| ||| |||||| || |||||||| || || || |||||  | || ||    
T  14013 gcactcttaattggttggctgttcacaatgactttgactatgatattaagaatcttaaagttgagcagtttgttattgtttcactcgatttgagaactga 13914  T
Q  153 gacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc 203  Q
    |||||||||||| || |   ||||||||| |||| ||||| ||||||||||    
T  13913 gacatacaatcagtaccgtctgcctcgtgattttcatgaaatgccatctgc 13863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 203
Target Start/End: Complemental strand, 22848 - 22698
Alignment:
Q  53 gcacttttaactggttggctatccacaatgaccttccctatcgtgttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacgga 152  Q
    ||||| |||| ||||||||| | ||||||||| ||  ||||  | |||||||| ||| |||||| || |||||||| || || || |||||  | || ||    
T  22848 gcactcttaattggttggctgttcacaatgactttgactatgatattaagaatcttaaagttgagcagtttgttattgtttcactcgatttgagaactga 22749  T
Q  153 gacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc 203  Q
    |||||||||||| || |   ||||||||| |||| ||||| ||||||||||    
T  22748 gacatacaatcagtaccgtctgcctcgtgattttcatgaaatgccatctgc 22698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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