View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3827_low_17 (Length: 248)
Name: NF3827_low_17
Description: NF3827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3827_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 29922397 - 29922628
Alignment:
| Q |
1 |
ttatatttctatttccttttagtcgattgtaacggaacgccaacaccttataagtatcagttgaattgtcaaaaccaaatttgaaattgaaatcgcctcc |
100 |
Q |
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| T |
29922397 |
ttatatttctatttccttttagtctattgtaacggaacgccaacaccttataagtatcagttgaattgtcaaaaccaaatttgaaattgaaatcgcctcc |
29922496 |
T |
|
| Q |
101 |
ataccccgaaattggtccaaaatcataaaaatacccaaatttttctgatgttgttgtcctgatggatgggttccaaacacagaaccaatactctctacgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29922497 |
ataccccgaaattggtccaaaatcataaaaatacccaaatttttctgatgttgttgtcctgatggatgggttccaaacacggaaccaatactctctacgc |
29922596 |
T |
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| Q |
201 |
caattctcttgatacccatcatgggttaaaga |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
29922597 |
caattctcttgatacccatcatgggttaaaga |
29922628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 29431429 - 29431496
Alignment:
| Q |
25 |
gattgtaacggaacgccaacaccttataagtatcagttgaattgtcaaaaccaaatttgaaattgaaa |
92 |
Q |
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| T |
29431429 |
gattgtaacgggacgccaccaccttataagtgtcggttgcattgtcaaaaccaaagttaaacttgaaa |
29431496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 29899013 - 29898953
Alignment:
| Q |
25 |
gattgtaacggaacgccaacaccttataagtatcagtt-gaattgtcaaaaccaaatttgaa |
85 |
Q |
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||||||||||| | |||| |||||||||||| || ||| ||||||||||||||||||||||| |
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| T |
29899013 |
gattgtaacggtatgccaccaccttataagt-tctgtttgaattgtcaaaaccaaatttgaa |
29898953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 4366924 - 4366988
Alignment:
| Q |
29 |
gtaacggaacgccaacaccttataagtatcagttgaattgtcaaaaccaaatttgaaattgaaat |
93 |
Q |
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||||||| || ||| |||||||||||||||||||||||||||| ||||||| ||||| ||||||| |
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| T |
4366924 |
gtaacgggacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaat |
4366988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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