View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3827_low_2 (Length: 692)
Name: NF3827_low_2
Description: NF3827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3827_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 19 - 637
Target Start/End: Original strand, 6979414 - 6980031
Alignment:
| Q |
19 |
tacctctctatcactttgtgtcttgtgtcgtcgccaataccatgctctatctcttctacaacacaatc----gtcttatcctgagacggactatttgaag |
114 |
Q |
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| T |
6979414 |
tacctctctatcactttgtgtcttgtgtcgtcgccaataccatgctccatctcttctacaacacaatcaattgtcttatcctgagacggactatttggag |
6979513 |
T |
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| Q |
115 |
tgtttcgtcctttcgtcatgtcactgcaacttcaatttccgatcatttgtatatctatacacaaaacttaagttgtatattgtaaacatcatgcaatata |
214 |
Q |
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| T |
6979514 |
tgtttcgtcctttcatcatgtcactacaacttcaatttccgatcatttgtatatctatacacaaaacttaagttgtatattgtaaagatcatgcaatata |
6979613 |
T |
|
| Q |
215 |
cattcatattcaaattagattagatatcatcatcaannnnnnncttcttcttgagatagagatataaaaaatgtttataaagcataagaggaatcttgtt |
314 |
Q |
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| T |
6979614 |
cattcatattcaaattagattagatagtatcatcaatttt----tttttcttgagatagagatataaaaaatgtttataaagcataagaggaatcttgtt |
6979709 |
T |
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| Q |
315 |
tgcaagatcaatgcatcatctataaaccaagagcaaaataaggtatgtggtgttaggatcaaaacctactttgcatggtcctacaaaacaatacaatttt |
414 |
Q |
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| T |
6979710 |
tgcaagatcaatgcatcatctataaaccaagagcaaaataaggtatgtggtgttaggatcaaaacctactttgcatggtcctacaaaacaatacaatttt |
6979809 |
T |
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| Q |
415 |
ctttcttttcttatataaaggagaaagtaaggatctaatgtcaattcatgggatgaaggaaaattttataagaaggtgaatagaataatcaaactattaa |
514 |
Q |
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| T |
6979810 |
ctttcttttcttatataaa-gagaaagtaaggatctaatgtcaattcatgggatgaaggaaaattttataagaaggtgaatagaataatcaaactattaa |
6979908 |
T |
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| Q |
515 |
ttaannnnnnnnnnnnnnnnatataataaaaattccacatcattatttacagcctggccaactcaacttccataaccctctccaacccttataaaaacat |
614 |
Q |
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| T |
6979909 |
ttaatttttattttatttttatataataaaaattccacatcattatttacagcctggccaactcaacttccataaccctctccaacccttataaaaacat |
6980008 |
T |
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| Q |
615 |
ccaaaagaaacaactctccaaaa |
637 |
Q |
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| T |
6980009 |
ccaaaagaaacaactctccaaaa |
6980031 |
T |
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