View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3827_low_25 (Length: 234)
Name: NF3827_low_25
Description: NF3827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3827_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 37 - 221
Target Start/End: Original strand, 26304932 - 26305116
Alignment:
| Q |
37 |
tattggaagtggtgaattggatcaaggacttgaaaattaggttaacttgtnnnnnnncatctcctataattattgaaaaagttaacttaattcaaaatca |
136 |
Q |
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| T |
26304932 |
tattggaagtggtgaattggatcaaggacttgaaaattaggttaacttgtaaaaaaacatctcctataattattgaaaaagttaacttaattcaaaatca |
26305031 |
T |
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| Q |
137 |
agtttgtagaattctatatcctgtagtagctcgaggaaaagggcaccctccttcaagacgaaaggcttctaaagttgataaaatt |
221 |
Q |
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| T |
26305032 |
agtttgtagaattctggatcctgtagtagctcgaggaaaagggcaccctccttcaagacgaaaggcttctaaagttgataaaatt |
26305116 |
T |
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Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 37 - 221
Target Start/End: Complemental strand, 8533049 - 8532865
Alignment:
| Q |
37 |
tattggaagtggtgaattggatcaaggacttgaaaattaggttaacttgtnnnnnnncatctcctataattattgaaaaagttaacttaattcaaaatca |
136 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| || ||||| ||| ||||||| | |||||||||||| |
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| T |
8533049 |
tattggaagtgatgaattggatcaaggacttgaaaattaagttaacttgtaaaaaaaattctccgattattatagaagaagttaattcaattcaaaatca |
8532950 |
T |
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| Q |
137 |
agtttgtagaattctatatcctgtagtagctcgaggaaaagggcaccctccttcaagacgaaaggcttctaaagttgataaaatt |
221 |
Q |
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| T |
8532949 |
agcgtcgagaattctggatcccatagtggctagaggaaaagggcgccctccttcaaaacgaaaggcttctatagttgataaaatt |
8532865 |
T |
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