View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3827_low_3 (Length: 685)
Name: NF3827_low_3
Description: NF3827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3827_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 22 - 404
Target Start/End: Original strand, 26184811 - 26185202
Alignment:
| Q |
22 |
tgtttatgatcttaaattgttgattggttagatgaaaaaatagttaaagtaaataaatgattgtgatagaacctactccaataatgaggggtacatctga |
121 |
Q |
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| T |
26184811 |
tgtttatgatcttaaattgttgattggttagatgaaaaaatagttaaagtaaataaatgattgtgatagaacctactccaataatgaggggtacatctga |
26184910 |
T |
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| Q |
122 |
tttagattcccctatatatgtcaatgctttattcattcaaaatgtacatgaaatgtctatgaaaaagtagnnnnnnnggtattaaaaaacttagaatcaa |
221 |
Q |
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| T |
26184911 |
tttagattcccctatatatgtcaatgctttattcattcaaaatgtacatgaaatgtctatgaaaaagtaatttttttggtattaaaaaacttagaatcaa |
26185010 |
T |
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| Q |
222 |
tcttttttaaaactagtatcaataattcagtgaaattattac----------atttttaatctaaaacaaataagtgatggctaccattgtgttgaaagt |
311 |
Q |
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| T |
26185011 |
tcttttttaaaactagtatcaatatttcagtgaaattattacatttttaattatttttaatctaaaacaaataagtgatggctaccattgtgttgaaagt |
26185110 |
T |
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| Q |
312 |
tctacaaattgtcatcataagtatgnnnnnnnncatagacctagtaaaagtttggagtctttggactataccttatgctaaaatcgaccctga |
404 |
Q |
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| T |
26185111 |
tctacaaattgtcatcataagtatg-tttttttcatagatctggtaaaagtttggtgtctttggactataccttatgctaaaatcgaccctga |
26185202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 404 - 593
Target Start/End: Original strand, 26185232 - 26185422
Alignment:
| Q |
404 |
aataaggacgtgtatgcttcaatgggaccaatttaaattata-cttaaacggttgtggtagattattatgtttttcataaaatatctcattaattactat |
502 |
Q |
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| T |
26185232 |
aataaggacgtgtatgcttcaatgggaccaatttaaattataacttaaacggttgtggtagattattatgtttttcataaaatatctcattaattactat |
26185331 |
T |
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| Q |
503 |
gttacgttgttatattactttatagtaaattatttcaacaaacatctgcaagatatgattagaggatactgtcaagaaaaaatttagcctt |
593 |
Q |
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| T |
26185332 |
gttacgttgttatattactttatagtaaattatttcaacaaacatctgcaagatatgattagaggatactgtcaagaaaaaatttagcctt |
26185422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 618 - 674
Target Start/End: Original strand, 26185415 - 26185471
Alignment:
| Q |
618 |
ttagccttgcattttttatctttttatttcatatcatgttctaatttggatacctat |
674 |
Q |
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| T |
26185415 |
ttagccttgcattttttatctttttatttcatatcatgttttaatttggatacctat |
26185471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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