View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3827_low_4 (Length: 534)
Name: NF3827_low_4
Description: NF3827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3827_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 5270454 - 5269929
Alignment:
| Q |
1 |
tcaagatgagattcatatccaaaatagataagcctagagattcgtatcatttagatgtttagattcagttttgtattgaattgagatatgactcgcatgt |
100 |
Q |
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| T |
5270454 |
tcaagatgagattcatatccaaaatagataagcctagagattcgtatcatttagatgtttagattcagttttgtattgaattgagatatgactcgcatgt |
5270355 |
T |
|
| Q |
101 |
gtcgtaagattaccacgtttcattttactctgggaacttttgtcttgcttggtaggtagtatcattagagtaaggaataccagtttatttccctcaaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5270354 |
gtcgtaagattaccacgtttcattttactctgggaacttttgtcttgcttggtaggtagtatcattagagtaaggaataccagtttatttccctcaaaac |
5270255 |
T |
|
| Q |
201 |
agggnnnnnnngtatatcatagatgaatgtaacagcatgtaggttgtatttacttatccctcccttcagatatggttagctagaaagatgcacctagtgt |
300 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5270254 |
agggaaaaaaagtatatcatagacgaatgtaacagcatgtaggttgtatttacttatccctcccttcagatatggttagctagaaagatgcacctagtgt |
5270155 |
T |
|
| Q |
301 |
cacaacactccataatttagggtctttctatgtcatttcctttcttgttttaagtattggaagattttgctcttatagtcataattttatgtatttgtga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| |
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| T |
5270154 |
cacaacactccataatttagggtctttctatgtcatttcctttcttgttttaagtatcggaagattttgctcttatagtcgtacttttatgtatttgtga |
5270055 |
T |
|
| Q |
401 |
ccaatgaaggaaggaagtttccgcaatcaaaggccatggccaccagtttacaaaccatcaataacagtttcgtctctttgtatttatttgaaataaaaca |
500 |
Q |
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| T |
5270054 |
ccaatgaaggaaggaagtttccgcaatcaaaggccatggccaccagtttacaaaccatcaataacagtttcgtctttttgtatttatttgaaataaaaca |
5269955 |
T |
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| Q |
501 |
atcatttgctcttcattttgatgatg |
526 |
Q |
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| T |
5269954 |
atcatttgctcttcattttgatgatg |
5269929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 22759030 - 22759071
Alignment:
| Q |
69 |
ttttgtattgaattgagatatgactcgcatgtgtcgtaagat |
110 |
Q |
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| T |
22759030 |
ttttgtatcgaattgagatatgactcgcatgtatcgtaagat |
22759071 |
T |
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