View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3827_low_5 (Length: 493)
Name: NF3827_low_5
Description: NF3827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3827_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 6 - 479
Target Start/End: Complemental strand, 7627552 - 7627079
Alignment:
| Q |
6 |
aggagcagagacaagttcagcagcagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaactta |
105 |
Q |
| |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627552 |
aggaacagacacaagttcagcagcagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaactta |
7627453 |
T |
|
| Q |
106 |
tatgaagacaaagattttataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccat |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627452 |
tatgaagacaaagattttataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccat |
7627353 |
T |
|
| Q |
206 |
tactattaccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaaggga |
305 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627352 |
tactattgccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaaggga |
7627253 |
T |
|
| Q |
306 |
tcctgagaattggaatgatcctgaagagttttatcctgaaaggttcattataagttcagtggattttaaagggaagaattttgagttgattccatttgga |
405 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627252 |
tcctgagaattggaatgaccctgaagagttttatcctgaaaggttcattataagttcagtggattttaaagggaagaattttgagttgattccatttgga |
7627153 |
T |
|
| Q |
406 |
agtggaagaagaatgtgtcctgcaatgaacatgggagtggtcactgttgagcttacacttgctaatcttcttca |
479 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627152 |
agtggaagaagaatgtgtcctgcaatgaacatgggagtggtcactgttgagcttacacttgctaatcttcttca |
7627079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 6 - 479
Target Start/End: Complemental strand, 7623001 - 7622528
Alignment:
| Q |
6 |
aggagcagagacaagttcagcagcagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaactta |
105 |
Q |
| |
|
|||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7623001 |
aggaacagacacaagttcagcagtagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaactta |
7622902 |
T |
|
| Q |
106 |
tatgaagacaaagattttataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622901 |
tatgaagacaaagattttataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccat |
7622802 |
T |
|
| Q |
206 |
tactattaccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaaggga |
305 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622801 |
tactattgccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaaggga |
7622702 |
T |
|
| Q |
306 |
tcctgagaattggaatgatcctgaagagttttatcctgaaaggttcattataagttcagtggattttaaagggaagaattttgagttgattccatttgga |
405 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622701 |
tcctgagaattggaatgaccctgaagagttttatcctgaaaggttcattataagttcagtggattttaaagggaagaattttgagttgattccatttgga |
7622602 |
T |
|
| Q |
406 |
agtggaagaagaatgtgtcctgcaatgaacatgggagtggtcactgttgagcttacacttgctaatcttcttca |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7622601 |
agtggaagaagaatgtgtcctgcaatgaacatgggagtggtcactgttgagcttacacttgctaatcttcttca |
7622528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 6 - 479
Target Start/End: Complemental strand, 7634688 - 7634215
Alignment:
| Q |
6 |
aggagcagagacaagttcagcagcagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaactta |
105 |
Q |
| |
|
|||| |||| |||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7634688 |
aggaacagacacaagttcagcaatagtggtttgggctatgacaacattgatgaacaatcctagagtgatgaacaaggttcaaatggaaatcagaaactta |
7634589 |
T |
|
| Q |
106 |
tatgaagacaaagattttataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccat |
205 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| | |||||||| || |||||||||| |
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| T |
7634588 |
tatgaagacaaatattttataaatgaagatgatattgaaaagctaccttatcttaaagcagtggtgaaagagacaatgagattatttccaccatcaccat |
7634489 |
T |
|
| Q |
206 |
tactattaccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaaggga |
305 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||| |
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|
| T |
7634488 |
tactagtaccaagagaaacaatagaaaattgtaacatagatggttatgagattaaaccaaaaactttagtgtatgttaatgcatgggccataggaaggga |
7634389 |
T |
|
| Q |
306 |
tcctgagaattggaatgatcctgaagagttttatcctgaaaggttcattataagttcagtggattttaaagggaagaattttgagttgattccatttgga |
405 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| | |||||||||||| |
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| T |
7634388 |
tcctgagaattggaaagaccctgaagagttttatcctgaaaggttcattatgagttcagtggactttaaagggaaaaattttgagctaattccatttgga |
7634289 |
T |
|
| Q |
406 |
agtggaagaagaatgtgtcctgcaatgaacatgggagtggtcactgttgagcttacacttgctaatcttcttca |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7634288 |
agtggaagaagaatgtgtcctgcaatgaacatgggagtggtcactgttgagcttacacttgctaatcttcttca |
7634215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 425
Target Start/End: Original strand, 22941495 - 22941586
Alignment:
| Q |
334 |
ttttatcctgaaaggttcattataagttcagtggattttaaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcc |
425 |
Q |
| |
|
||||||||||||||||| ||| ||||| || |||| ||| || || ||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
22941495 |
ttttatcctgaaaggtttattgaaagttgtgtagattataagggaaataattttgagttcattccatttggtgctggaagaagaatgtgtcc |
22941586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 425
Target Start/End: Original strand, 22916834 - 22916886
Alignment:
| Q |
373 |
aaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcc |
425 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||| ||||| |||||||||||||| |
|
|
| T |
22916834 |
aaaggtaataattttgagttcattccgtttggcagtggcagaagaatgtgtcc |
22916886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 425
Target Start/End: Complemental strand, 22932253 - 22932201
Alignment:
| Q |
373 |
aaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcc |
425 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||| ||||| |||||||||||||| |
|
|
| T |
22932253 |
aaaggtaataattttgagttcattccgtttggcagtggcagaagaatgtgtcc |
22932201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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