View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3827_low_7 (Length: 470)
Name: NF3827_low_7
Description: NF3827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3827_low_7 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0074 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 18)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 20235766 - 20236222
Alignment:
| Q |
1 |
actcacataattcgagaggtcataagaaacatggtgtggattaaatgaacttttattcttctttccagcaataatctctaaaagcataactccaaaacta |
100 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20235766 |
actcacataattcaagaggtcataagcaacatggtgtggagtaaatgaacttttattcttctttccagcaataatctctaaaagcataactccaaaacta |
20235865 |
T |
|
| Q |
101 |
taaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacatataaccactgcaaaataaattaaatgtatattcattaagaagaagtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||||| || |||||||| ||||| |
|
|
| T |
20235866 |
taaatgtcggatttttcagaaaattgtccgaccattgcatattccggagacatataaccactacaaaataaattaaatgtattttaattaagaataagtg |
20235965 |
T |
|
| Q |
201 |
ggaaaagatttgtacnnnnnnnnnnnngtagagaaatgataacagaaggttcaacatacaaaacttacaatgttccaacaattctatttgtacttccctc |
300 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20235966 |
ggaaaagatttgta----taaaaaaaagtagaaaaa-gataacagaggggtcaacattcaaaacttacaatgttccaacaattctatttgtacttccctc |
20236060 |
T |
|
| Q |
301 |
gtcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttaggaatcatatttttgtccagtagaatattgctaggtttgagatcccgatgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
20236061 |
atcttgacttatttcaacaattcgagccaaaccaaaatcagaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgt |
20236160 |
T |
|
| Q |
401 |
ataactttgagtcgagaatgatcatgcaaataaagaatcccttgaacaattcctcctatgat |
462 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
20236161 |
ataactttgagccgtgaatgatcatgcaaataaagaatccctcggacaattcctcctatgat |
20236222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 22129750 - 22130206
Alignment:
| Q |
1 |
actcacataattcgagaggtcataagaaacatggtgtggattaaatgaacttttattcttctttccagcaataatctctaaaagcataactccaaaacta |
100 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22129750 |
actcacataattcaagaggtcataagcaacatggtgtggagtaaatgaacttttattcttctttccagcaataatctctaaaagcataactccaaaacta |
22129849 |
T |
|
| Q |
101 |
taaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacatataaccactgcaaaataaattaaatgtatattcattaagaagaagtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||||| || |||||||| ||||| |
|
|
| T |
22129850 |
taaatgtcggatttttcagaaaattgtccgaccattgcatattccggagacatataaccactacaaaataaattaaatgtattttaattaagaataagtg |
22129949 |
T |
|
| Q |
201 |
ggaaaagatttgtacnnnnnnnnnnnngtagagaaatgataacagaaggttcaacatacaaaacttacaatgttccaacaattctatttgtacttccctc |
300 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22129950 |
ggaaaagatttgta----taaaaaaaagtagaaaaa-gataacagaggggtcaacattcaaaacttacaatgttccaacaattctatttgtacttccctc |
22130044 |
T |
|
| Q |
301 |
gtcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttaggaatcatatttttgtccagtagaatattgctaggtttgagatcccgatgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
22130045 |
atcttgacttatttcaacaattcgagccaaaccaaaatcagaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgt |
22130144 |
T |
|
| Q |
401 |
ataactttgagtcgagaatgatcatgcaaataaagaatcccttgaacaattcctcctatgat |
462 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
22130145 |
ataactttgagccgtgaatgatcatgcaaataaagaatccctcggacaattcctcctatgat |
22130206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 22207233 - 22206783
Alignment:
| Q |
1 |
actcacataattcgagaggtcataagaaacatggtgtggattaaatgaacttttattcttctttccagcaataatctctaaaagcataactccaaaacta |
100 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22207233 |
actcacatgattcaagaggtcataagcaacatggtgtggagtaaatgaacttttgttcttctttccaacaataatctctaaaagcataactccaaaacta |
22207134 |
T |
|
| Q |
101 |
taaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacatataaccactgcaaaataaattaaatgtatattcattaagaagaagtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
22207133 |
taaatgtcggatttttcagaaaattgtccaagcattgcatattctggagacatataaccactgcaaaataaattaaatgtattataattaagaagaagtg |
22207034 |
T |
|
| Q |
201 |
ggaaaagatttgtacnnnnnnnnnnnngtagagaaatgataacagaaggttcaacatacaaaacttacaatgttccaacaattctatttgtacttccctc |
300 |
Q |
| |
|
||||| ||||||||| | | ||| || | | | || ||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22207033 |
ggaaacgatttgtacaaa-----------aaaaaaaagaagataaaggggtcaacattcaaaacttacaatgttccaactattctatttgtacttccctc |
22206945 |
T |
|
| Q |
301 |
gtcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttaggaatcatatttttgtccagtagaatattgctaggtttgagatcccgatgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || | ||||||||||||||||||||||||||||||| |
|
|
| T |
22206944 |
gtcttgacttatttcaacaattcgagccaaaccaaaatcagaaattttaggaatcatattttcatctaatagaatattgctaggtttgagatcccgatgt |
22206845 |
T |
|
| Q |
401 |
ataactttgagtcgagaatgatcatgcaaataaagaatcccttgaacaattcctcctatgat |
462 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
22206844 |
ataactttgagtcgagaattttcatgcaaataaagaatccctcaaacaatacctcctatgat |
22206783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 18979366 - 18979826
Alignment:
| Q |
1 |
actcacataattcgagaggtcataagaaacatggtgtggattaaatgaacttttattcttctttccagcaataatctctaaaagcataactccaaaacta |
100 |
Q |
| |
|
|||||||| |||| ||||| ||| || |||||| |||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18979366 |
actcacatgattcaagaggccatcagcaacatgatgtggagtaaacgaacttttattcttctttccagcaataatctctacaagcataactccaaaacta |
18979465 |
T |
|
| Q |
101 |
taaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacatataaccactgcaaaataaattaaatgtatattcattaagaagaagtg |
200 |
Q |
| |
|
|| ||||||||||||||||||||||| |||| |||| ||||||| ||||||||||||||||| || ||||||||||||||| || |||||||||||| | |
|
|
| T |
18979466 |
tatatgtcggatttttcagaaaattgtccaaacattacatattccggagacatataaccactacataataaattaaatgtaatttaattaagaagaagag |
18979565 |
T |
|
| Q |
201 |
ggaaaagatttgtacnnnnnnnnnnnngtagagaaatgataacagaaggttcaacatacaaaacttacaatgttccaacaattctatttgtacttccctc |
300 |
Q |
| |
|
|||||| | |||||| ||||| ||| ||||||||| || |||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18979566 |
ggaaaacacttgtaccaaaaaacaaaagtaga-aaaggataacagagggc-caacattcaaaacttacaatgttccaacaattctatctgtacttccctc |
18979663 |
T |
|
| Q |
301 |
gtcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttaggaatcatatttttgtccagtagaatattgctaggtttgagatcccgatgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| |||||||||| |
|
|
| T |
18979664 |
atcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttaggaatcatattttcgtctaatagaatattgctaggtttgacatcccgatgt |
18979763 |
T |
|
| Q |
401 |
ataactttgagtcgagaatgatcatgcaaataaagaatcccttgaacaattcctcctatgata |
463 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
18979764 |
ataactttgagtcgagaatgttcatgcaaataaagaagtccacgaacaattcctcctatgata |
18979826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 18990718 - 18991181
Alignment:
| Q |
1 |
actcacataattcgagaggtcataagaaacatggtgtggattaaatgaacttttattcttctttccagcaataatctctaaaagcataactccaaaacta |
100 |
Q |
| |
|
|||||||| ||| ||||| ||| || |||||| |||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18990718 |
actcacatgatttaagaggccatcagcaacatgatgtggagtaaacgaacttttattcttcttttcagcaataatctctaaaagcataactccaaaacta |
18990817 |
T |
|
| Q |
101 |
taaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacatataaccactgcaaaataaattaaatgtatattcattaagaagaagtg |
200 |
Q |
| |
|
||||||||||| |||||||||||||| |||| |||| ||||||| |||||||||||| |||||||||||||||||||||| || |||||||||||| | |
|
|
| T |
18990818 |
taaatgtcggaattttcagaaaattgtccaaacattacatattccggagacatataaatactgcaaaataaattaaatgtaatttaattaagaagaagag |
18990917 |
T |
|
| Q |
201 |
ggaaaagatttgtacnnnnnnnnnnnngtagagaaatgataacagaaggttcaacatacaaaacttacaatgttccaacaattctatttgtacttccctc |
300 |
Q |
| |
|
|||||| | |||||| || | |||| | ||||||| || |||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18990918 |
ggaaaacacttgtaccaaaaaacaaaagtgg-gaaaggttaacagagggc-caacattcaaaacttacaatgttccaacaattctatctgtacttccctc |
18991015 |
T |
|
| Q |
301 |
gtcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttaggaatcatatttttgtccagtagaatattgctaggtttgagatcccgatgt |
400 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
18991016 |
atcttgacttatttcaataattcgagccaaaccaaaatctgaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgt |
18991115 |
T |
|
| Q |
401 |
ataactttgagtcgagaatgatcatgcaaataaagaatcccttgaacaattcctcctatgatactg |
466 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
18991116 |
ataactttgagtcgagaatgttcatgcaaataaagaagtcctcgaacaattccacctatgatactg |
18991181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 20083662 - 20084122
Alignment:
| Q |
1 |
actcacataattcgagaggtcataagaaacatggtgtggattaaatgaacttttattcttctttccagcaataatctctaaaagcataactccaaaacta |
100 |
Q |
| |
|
|||||||| |||| ||||| ||| || |||||| |||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20083662 |
actcacatgattcaagaggccatcagcaacatgatgtggagtaaacgaacttttattcttctttccagcaataatctctataagcataactccaaaacta |
20083761 |
T |
|
| Q |
101 |
taaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacatataaccactgcaaaataaattaaatgtatattcattaagaagaagtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||| ||||||| ||||||||||||||||| || ||||||||||||||| || |||||||||||| | |
|
|
| T |
20083762 |
taaatgtcggatttttcagaaaattgtccgaacattacatattccggagacatataaccactacataataaattaaatgtaatttaattaagaagaagag |
20083861 |
T |
|
| Q |
201 |
ggaaaagatttgtacnnnnnnnnnnnngtagagaaatgataacagaaggttcaacatacaaaacttacaatgttccaacaattctatttgtacttccctc |
300 |
Q |
| |
|
|||||| | |||||| || | ||| | ||||||| || |||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20083862 |
ggaaaacacttgtaccaaaaaacaaaagttgt-aaaggttaacagagggc-caacattcaaaacttacaatgttccaacaattctatctgtacttccctc |
20083959 |
T |
|
| Q |
301 |
gtcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttaggaatcatatttttgtccagtagaatattgctaggtttgagatcccgatgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||||||||||||||||| ||| |
|
|
| T |
20083960 |
atcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttagtaatcatattttcgtctaatagaatattgctaggtttgagatcccggtgt |
20084059 |
T |
|
| Q |
401 |
ataactttgagtcgagaatgatcatgcaaataaagaatcccttgaacaattcctcctatgata |
463 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
20084060 |
ataactttcagtcgggaatgttcatgcaaataaagaagtcctcgaacaattcctcctatgata |
20084122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 24387340 - 24386887
Alignment:
| Q |
1 |
actcacataattcgagaggtcataagaaacatggtgtggattaaatgaacttttattcttctttccagcaataatctctaaaagcataactccaaaacta |
100 |
Q |
| |
|
|||||||| |||| | ||| ||| || |||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
24387340 |
actcacatgattcaaaaggccatcagcaacatgatgtggagtaaacgaacttttattcttctttccagcaataatctcgaaaagcagaactccaaaacta |
24387241 |
T |
|
| Q |
101 |
taaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacatataaccactgcaaaataaattaaatgtatattcattaagaagaagtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||| |||| |||||||||||||| |||||||||||||||||| || |||||||||||| | |
|
|
| T |
24387240 |
taaatgtcggatttttcagaaaattgtccaaacattacata-------gacatataaccactacaaaataaattaaatgtaatttaattaagaagaagag |
24387148 |
T |
|
| Q |
201 |
ggaaaagatttgtacnnnnnnnnnnnngtagagaaatgataacagaaggttcaacatacaaaacttacaatgttccaacaattctatttgtacttccctc |
300 |
Q |
| |
|
|||||| | |||||| || | |||| ||||||||| || |||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24387147 |
ggaaaacacttgtaccaaaaaacaaaagtgg-gaaaggataacagagggc-caacattcaaaacttacaatgttccaacaattctatctgtacttccctc |
24387050 |
T |
|
| Q |
301 |
gtcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttaggaatcatatttttgtccagtagaatattgctaggtttgagatcccgatgt |
400 |
Q |
| |
|
| |||| ||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| ||| | ||||||||||||||||||||||| ||||||| |
|
|
| T |
24387049 |
atattgaattatttcaacaattcgagccaaaacaaaatatgaaattttagaaatcatattttcgtctaatagaatattgctaggtttgagattccgatgt |
24386950 |
T |
|
| Q |
401 |
ataactttgagtcgagaatgatcatgcaaataaagaatcccttgaacaattcctcctatgata |
463 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| ||| || ||||||||||||||||| |
|
|
| T |
24386949 |
ataactttaagtcgagaatgttcatgcaaataaagaagtcctcgagcaattcctcctatgata |
24386887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 238 - 462
Target Start/End: Original strand, 18995676 - 18995900
Alignment:
| Q |
238 |
gataacagaaggttcaacatacaaaacttacaatgttccaacaattctatttgtacttccctcgtcttgacttatttcaacaattcgagccaaaccaaaa |
337 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18995676 |
gataacagagggatcaacattcaaaacttacaatgttccagcaattctatttgtatttccctcatcttgactaatttcaacaattcgagccaaaccaaaa |
18995775 |
T |
|
| Q |
338 |
tctgaaattttaggaatcatatttttgtccagtagaatattgctaggtttgagatcccgatgtataactttgagtcgagaatgatcatgcaaataaagaa |
437 |
Q |
| |
|
||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
18995776 |
tctgaaattttaggaatcatattttcgtataatagaatattgctaggtttgagatcccgatgtataacttttagtcgagaatgttcatgcaaataaagaa |
18995875 |
T |
|
| Q |
438 |
tcccttgaacaattcctcctatgat |
462 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
18995876 |
tccctcgaacaattcctcctatgat |
18995900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 18995430 - 18995641
Alignment:
| Q |
1 |
actcacataattcgagaggtcataagaaacatggtgtggattaaatgaacttttattcttctttccagcaataatctctaaaagcataactccaaaacta |
100 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18995430 |
actcacatgattcaagaggtcataagcaacatggtgtggagtaaatggacttttattcttctttccagcaataatctctaaaagcataactccaaaacta |
18995529 |
T |
|
| Q |
101 |
taaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacatataaccactgcaaaataaattaaatgtatattcattaagaagaagtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || ||| |||| ||| |
|
|
| T |
18995530 |
taaatgtcggatttttcagaaaattgtccaagcattgcatattccggagacatataaccactacaaaataaattaaatgtattttaattttgaagtcgtg |
18995629 |
T |
|
| Q |
201 |
ggaaaagatttg |
212 |
Q |
| |
|
||||||||||| |
|
|
| T |
18995630 |
tgaaaagatttg |
18995641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 260 - 462
Target Start/End: Original strand, 22086077 - 22086279
Alignment:
| Q |
260 |
aaaacttacaatgttccaacaattctatttgtacttccctcgtcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttaggaatcatat |
359 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
22086077 |
aaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttatttcgaccattcgtgccaaaccaaaatctgaaattctaggaatcatat |
22086176 |
T |
|
| Q |
360 |
ttttgtccagtagaatattgctaggtttgagatcccgatgtataactttgagtcgagaatgatcatgcaaataaagaatcccttgaacaattcctcctat |
459 |
Q |
| |
|
||| || | ||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||||| |
|
|
| T |
22086177 |
tttcatctaatagaatattacttggtttgagatcacgatgtataactttgagtcgagaatgttcatgcaaataaagaattcctccagcaattcctcctat |
22086276 |
T |
|
| Q |
460 |
gat |
462 |
Q |
| |
|
||| |
|
|
| T |
22086277 |
gat |
22086279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 261 - 462
Target Start/End: Original strand, 21968194 - 21968395
Alignment:
| Q |
261 |
aaacttacaatgttccaacaattctatttgtacttccctcgtcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttaggaatcatatt |
360 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| || |||||||||||||| || || || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21968194 |
aaacttactatgttccaacaattctatttgtacttccttcctcttgacttatttcgaccatccgtgccaaaccaaaatctgaaattttaggaatcatatt |
21968293 |
T |
|
| Q |
361 |
tttgtccagtagaatattgctaggtttgagatcccgatgtataactttgagtcgagaatgatcatgcaaataaagaatcccttgaacaattcctcctatg |
460 |
Q |
| |
|
|| || | ||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| || |||||||||| ||| |
|
|
| T |
21968294 |
ttcatctaatagaatattactaggtttgagatcgcgatgtataactttgagtcgagaatgctcatgcaaataaagaattcctcgagcaattcctccaatg |
21968393 |
T |
|
| Q |
461 |
at |
462 |
Q |
| |
|
|| |
|
|
| T |
21968394 |
at |
21968395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 260 - 466
Target Start/End: Complemental strand, 20233385 - 20233179
Alignment:
| Q |
260 |
aaaacttacaatgttccaacaattctatttgtacttccctcgtcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttaggaatcatat |
359 |
Q |
| |
|
||||||||||||||||| || || |||||||||||||| | ||| || ||| ||| ||||||| ||| | |||||||||||| ||||| |||||||| | |
|
|
| T |
20233385 |
aaaacttacaatgttcccacgatcctatttgtacttcctttgtcctggtttagttctacaattctagcaagaccaaaatctgatatttttggaatcatgt |
20233286 |
T |
|
| Q |
360 |
ttttgtccagtagaatattgctaggtttgagatcccgatgtataactttgagtcgagaatgatcatgcaaataaagaatcccttgaacaattcctcctat |
459 |
Q |
| |
|
| | || | || |||||| ||||||||||| || ||||| |||||||||||||||||||| ||||||||||| ||||| |||||| ||||||| | ||| |
|
|
| T |
20233285 |
tctcatctaataaaatattactaggtttgaggtcacgatgaataactttgagtcgagaatgttcatgcaaatagagaattccttgagcaattccccttat |
20233186 |
T |
|
| Q |
460 |
gatactg |
466 |
Q |
| |
|
|||||| |
|
|
| T |
20233185 |
aatactg |
20233179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 260 - 466
Target Start/End: Complemental strand, 22127369 - 22127163
Alignment:
| Q |
260 |
aaaacttacaatgttccaacaattctatttgtacttccctcgtcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttaggaatcatat |
359 |
Q |
| |
|
||||||||||||||||| || || |||||||||||||| | ||| || ||| ||| ||||||| ||| | |||||||||||| ||||| |||||||| | |
|
|
| T |
22127369 |
aaaacttacaatgttcccacgatcctatttgtacttcctttgtcctggtttagttctacaattctagcaagaccaaaatctgatatttttggaatcatgt |
22127270 |
T |
|
| Q |
360 |
ttttgtccagtagaatattgctaggtttgagatcccgatgtataactttgagtcgagaatgatcatgcaaataaagaatcccttgaacaattcctcctat |
459 |
Q |
| |
|
| | || | || |||||| ||||||||||| || ||||| |||||||||||||||||||| ||||||||||| ||||| |||||| ||||||| | ||| |
|
|
| T |
22127269 |
tctcatctaataaaatattactaggtttgaggtcacgatgaataactttgagtcgagaatgttcatgcaaatagagaattccttgagcaattccccttat |
22127170 |
T |
|
| Q |
460 |
gatactg |
466 |
Q |
| |
|
|||||| |
|
|
| T |
22127169 |
aatactg |
22127163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 22085825 - 22085992
Alignment:
| Q |
1 |
actcacataattcgagaggtcataagaaacatggtgtggattaaatgaacttttattcttctttccagcaataatctctaaaagcataactccaaaacta |
100 |
Q |
| |
|
||||||| ||||| ||||| || || |||||| ||||| | | |||||||| |||||||||||||||| | |||||||| | ||| |||||||||||| |
|
|
| T |
22085825 |
actcacagaattcaagaggctattagcaacatgttgtggttcatatgaacttatattcttctttccagctacaatctctaggatcatgactccaaaacta |
22085924 |
T |
|
| Q |
101 |
taaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacatataaccactgcaaaa |
168 |
Q |
| |
|
|||| || ||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
22085925 |
taaacatctgatttttcagaaaattgtccaaacattgcatattctggcgacatataaccactgtaaaa |
22085992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 21967942 - 21968104
Alignment:
| Q |
1 |
actcacataattcgagaggtcataagaaacatggtgtggattaaatgaacttttattcttctttccagcaataatctctaaaagcataactccaaaacta |
100 |
Q |
| |
|
||||||| ||||| ||||| || || |||||| ||||| | | |||||||| |||||||||||||||| | |||||||| | ||| |||||||||||| |
|
|
| T |
21967942 |
actcacagaattcaagaggctattagcaacatgttgtggttcatatgaacttatattcttctttccagctacaatctctaggatcatgactccaaaacta |
21968041 |
T |
|
| Q |
101 |
taaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacatataaccactg |
163 |
Q |
| |
|
|||| || ||||||||||||||||| | || ||||||||||||||||||||||||||||||| |
|
|
| T |
21968042 |
taaacatctgatttttcagaaaattgtcaaaacattgcatattctggagacatataaccactg |
21968104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 45 - 162
Target Start/End: Original strand, 22001810 - 22001927
Alignment:
| Q |
45 |
atgaacttttattcttctttccagcaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgcccaagcattgcatattc |
144 |
Q |
| |
|
|||||||| ||||||||||||||| | |||||||| | ||| ||||||||||||||||| || ||||||||||||||||| | || |||||||||||| |
|
|
| T |
22001810 |
atgaacttacattcttctttccagctacaatctctatgatcatgactccaaaactataaatatctgatttttcagaaaattgtctaaacattgcatattc |
22001909 |
T |
|
| Q |
145 |
tggagacatataaccact |
162 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
22001910 |
tggagacatataaccact |
22001927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 20233572 - 20233467
Alignment:
| Q |
54 |
tattcttctttccagcaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacat |
153 |
Q |
| |
|
||||||||||||| | |||||| ||||||| ||| |||||||||||||||| || ||||| |||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
20233572 |
tattcttctttccggtaataatttctaaaaccatgactccaaaactataaacatcagatttctcagaaaattgcccgagcatcgcatattctggagacat |
20233473 |
T |
|
| Q |
154 |
ataacc |
159 |
Q |
| |
|
|||||| |
|
|
| T |
20233472 |
ataacc |
20233467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 22127556 - 22127451
Alignment:
| Q |
54 |
tattcttctttccagcaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacat |
153 |
Q |
| |
|
||||||||||||| | |||||| ||||||| ||| |||||||||||||||| || ||||| |||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
22127556 |
tattcttctttccggtaataatttctaaaaccatgactccaaaactataaacatcagatttctcagaaaattgcccgagcatcgcatattctggagacat |
22127457 |
T |
|
| Q |
154 |
ataacc |
159 |
Q |
| |
|
|||||| |
|
|
| T |
22127456 |
ataacc |
22127451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 7563 - 7104
Alignment:
| Q |
1 |
actcacataattcgagaggtcataagaaacatggtgtggattaaatgaacttttattcttctttccagcaataatctctaaaagcataactccaaaacta |
100 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7563 |
actcacatgattcaagaggtcataagcaacatggtgtggagtaaatggacttttattcttctttccagcaataatctctaaaagcataactccaaaacta |
7464 |
T |
|
| Q |
101 |
taaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacatataaccactgcaaaataaattaaatgtatattcattaagaagaagtg |
200 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || |||| |||| ||| |
|
|
| T |
7463 |
taaatgtcagatttttcagaaaattgtccaagcattgcatattccggagacatataaccactacaaaataaattaaatgtattttaattatgaagttgtg |
7364 |
T |
|
| Q |
201 |
ggaaaagatttgtacnnnnnnnnnnnngtagagaaatgataacagaaggttcaacatacaaaacttacaatgttccaacaattctatttgtacttccctc |
300 |
Q |
| |
|
||||||||||| || ||||| ||| ||||||||| | ||||||| |||||||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
7363 |
cgaaaagatttgaaccaaaaaaaaga-gtagaaaaa-gataacagaggtgtcaacattcaaaacttactatgttccagcaattctatttgtatttccctc |
7266 |
T |
|
| Q |
301 |
gtcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttaggaatcatatttttgtccagtagaatattgctaggtttgagatcccgatgt |
400 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
7265 |
atcttgacttatttcaacaatccgagccaaaccaaaatctgaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgt |
7166 |
T |
|
| Q |
401 |
ataactttgagtcgagaatgatcatgcaaataaagaatcccttgaacaattcctcctatgat |
462 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7165 |
ataactttgagtcgtgaatgatcatgcaaataaagaatccctcgaacaattcctcctatgat |
7104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 165; Significance: 5e-88; HSPs: 2)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 238 - 462
Target Start/End: Complemental strand, 49783 - 49559
Alignment:
| Q |
238 |
gataacagaaggttcaacatacaaaacttacaatgttccaacaattctatttgtacttccctcgtcttgacttatttcaacaattcgagccaaaccaaaa |
337 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
49783 |
gataacagagggatcaacattcaaaacttacaatgttccagcaattctatttgtatttccctcatcttgactaatttcaacaattcgagccaaaccaaaa |
49684 |
T |
|
| Q |
338 |
tctgaaattttaggaatcatatttttgtccagtagaatattgctaggtttgagatcccgatgtataactttgagtcgagaatgatcatgcaaataaagaa |
437 |
Q |
| |
|
||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
49683 |
tctgaaattttaggaatcatattttcgttcaatagaatattgctaggtttgagatcccgatgtataactttgagtcgagaatattcatgcaaataaagaa |
49584 |
T |
|
| Q |
438 |
tcccttgaacaattcctcctatgat |
462 |
Q |
| |
|
||||| |||||||||| ||||||| |
|
|
| T |
49583 |
tccctctaacaattcctactatgat |
49559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 50029 - 49818
Alignment:
| Q |
1 |
actcacataattcgagaggtcataagaaacatggtgtggattaaatgaacttttattcttctttccagcaataatctctaaaagcataactccaaaacta |
100 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50029 |
actcacatgattcaagaggtcataagcaacatggtgtggagtaaatggacttttattcttctttccagcaataatctctaaaagcataactccaaaacta |
49930 |
T |
|
| Q |
101 |
taaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacatataaccactgcaaaataaattaaatgtatattcattaagaagaagtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || ||| |||| ||| |
|
|
| T |
49929 |
taaatgtcggatttttcagaaaattgtccaagcattgcatattccggagacatataaccactacaaaataaattaaatgtattttaattttgaagtcgtg |
49830 |
T |
|
| Q |
201 |
ggaaaagatttg |
212 |
Q |
| |
|
||||||||||| |
|
|
| T |
49829 |
tgaaaagatttg |
49818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 310 - 438
Target Start/End: Complemental strand, 47593157 - 47593029
Alignment:
| Q |
310 |
tatttcaacaattcgagccaaaccaaaatctgaaattttaggaatcatatttttgtccagtagaatattgctaggtttgagatcccgatgtataactttg |
409 |
Q |
| |
|
||||| |||||| | ||||| ||||||||||| ||||||||| ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
47593157 |
tatttgaacaatcctagccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttg |
47593058 |
T |
|
| Q |
410 |
agtcgagaatgatcatgcaaataaagaat |
438 |
Q |
| |
|
|| ||||||| ||||||||||||||||| |
|
|
| T |
47593057 |
agacgagaatattcatgcaaataaagaat |
47593029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 314 - 462
Target Start/End: Complemental strand, 47607418 - 47607270
Alignment:
| Q |
314 |
tcaacaattcgagccaaaccaaaatctgaaattttaggaatcatatttttgtccagtagaatattgctaggtttgagatcccgatgtataactttgagtc |
413 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||||||| |||||| || || | || |||||| |||||||| ||||| |||||||||||||| |||| |
|
|
| T |
47607418 |
tcaacaattctagccatgccaaaatctgagattttaggattcatatgttcatctaataaaatattactaggtttaagatcacgatgtataacttttagtc |
47607319 |
T |
|
| Q |
414 |
gagaatgatcatgcaaataaagaatcccttgaacaattcctcctatgat |
462 |
Q |
| |
|
|||||| |||||| |||||||||| ||| | || ||||||||||||| |
|
|
| T |
47607318 |
gagaataatcatgtaaataaagaactcctaaagcagttcctcctatgat |
47607270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 47619564 - 47619485
Alignment:
| Q |
89 |
actccaaaactataaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacatataaccactgcaaaa |
168 |
Q |
| |
|
|||||||||||| ||| ||| ||||||||||| |||| ||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
47619564 |
actccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccactgtaaaa |
47619485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 47627770 - 47627662
Alignment:
| Q |
55 |
attcttctttccagcaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacata |
154 |
Q |
| |
|
|||||| |||||| ||||||||| | || ||| |||||||||||| ||| || || || || |||||||| ||| ||||||||||||| |||||||| |
|
|
| T |
47627770 |
attcttttttccactaataatctcgagaaccatcactccaaaactaaaaacatcagacttctctgaaaattgtccatgcattgcatattccggagacatg |
47627671 |
T |
|
| Q |
155 |
taaccactg |
163 |
Q |
| |
|
||||||||| |
|
|
| T |
47627670 |
taaccactg |
47627662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 159
Target Start/End: Complemental strand, 47593737 - 47593640
Alignment:
| Q |
62 |
tttccagcaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacatataacc |
159 |
Q |
| |
|
||||||| |||||||||||||| || || ||||||||| ||| || || || || ||||| || |||||||||||||||||||| ||||| ||||| |
|
|
| T |
47593737 |
tttccagtaataatctctaaaacaatgacaccaaaactaaaaacatccgacttctctgaaaagtgtccaagcattgcatattctggggacatgtaacc |
47593640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 162
Target Start/End: Complemental strand, 47584667 - 47584565
Alignment:
| Q |
60 |
tctttccagcaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacatataacc |
159 |
Q |
| |
|
|||||||| ||||||||||| || ||| | |||||||||||| | || ||||| ||||||| | ||| |||| |||||||||||||| |||||||| |
|
|
| T |
47584667 |
tctttccactaataatctctagaaccatgattccaaaactatacacatctgatttcacagaaaagtatccatgcatggcatattctggagatatataacc |
47584568 |
T |
|
| Q |
160 |
act |
162 |
Q |
| |
|
||| |
|
|
| T |
47584567 |
act |
47584565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 297
Target Start/End: Complemental strand, 47698525 - 47698491
Alignment:
| Q |
263 |
acttacaatgttccaacaattctatttgtacttcc |
297 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
47698525 |
acttactatgttccaacaattctatttgtacttcc |
47698491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 47698676 - 47698603
Alignment:
| Q |
89 |
actccaaaactataaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacatataaccact |
162 |
Q |
| |
|
||||||||||| ||| ||| |||||||| |||| ||| ||| ||||||||||||| |||||||||| ||||| |
|
|
| T |
47698676 |
actccaaaactgaaaacgtccgatttttctgaaagttgtccatgcattgcatattcctgagacatatagccact |
47698603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 263 - 455
Target Start/End: Original strand, 10401609 - 10401801
Alignment:
| Q |
263 |
acttacaatgttccaacaattctatttgtacttccctcgtcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttaggaatcatatttt |
362 |
Q |
| |
|
|||||||||||||| || || |||||||| |||| | |||||| ||| ||||||||||| ||| | |||||||||||| ||||| ||||||||||||| |
|
|
| T |
10401609 |
acttacaatgttccgacgatcctatttgtgtttcctttgtcttggtttaattcaacaattctagcaagaccaaaatctgatatttttggaatcatatttt |
10401708 |
T |
|
| Q |
363 |
tgtccagtagaatattgctaggtttgagatcccgatgtataactttgagtcgagaatgatcatgcaaataaagaatcccttgaacaattcctc |
455 |
Q |
| |
|
|| | || |||||| ||||||||||| || || || |||||||||||||||||||| ||||| ||||| | ||| |||||| ||||||||| |
|
|
| T |
10401709 |
catctaataaaatattactaggtttgaggtcacggtgaataactttgagtcgagaatgttcatgtaaatagataattccttgagcaattcctc |
10401801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 56 - 171
Target Start/End: Original strand, 10401422 - 10401537
Alignment:
| Q |
56 |
ttcttctttccagcaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacatat |
155 |
Q |
| |
|
||||||||||||| |||||| || |||| ||| |||||||||||||||| || ||||| || |||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
10401422 |
ttcttctttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatatat |
10401521 |
T |
|
| Q |
156 |
aaccactgcaaaataa |
171 |
Q |
| |
|
|||| || |||||||| |
|
|
| T |
10401522 |
aacctctacaaaataa |
10401537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 253 - 407
Target Start/End: Complemental strand, 9102910 - 9102756
Alignment:
| Q |
253 |
aacatacaaaacttacaatgttccaacaattctatttgtacttccctcgtcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttagga |
352 |
Q |
| |
|
||||| |||||||||| ||| |||||||||||||||||||||||| ||||||||| || || ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
9102910 |
aacattcaaaacttactatgctccaacaattctatttgtacttccttcgtcttgatttgctttgtcaatttgagccaaaccaaaatctaaaattttagga |
9102811 |
T |
|
| Q |
353 |
atcatatttttgtccagtagaatattgctaggtttgagatcccgatgtataactt |
407 |
Q |
| |
|
||||||||| | | | ||||||| |||||||||||||| | ||||||||||| |
|
|
| T |
9102810 |
gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt |
9102756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 469770 - 469846
Alignment:
| Q |
86 |
ataactccaaaactataaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacatataaccact |
162 |
Q |
| |
|
|||||||||||||| | | |||||||| ||||||||||| || ||||||||||||| ||||||||||||||||| |
|
|
| T |
469770 |
ataactccaaaactgaacacatcggatttctcagaaaattgtccgtgcattgcatattccggagacatataaccact |
469846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 9103092 - 9102997
Alignment:
| Q |
60 |
tctttccagcaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacatat |
155 |
Q |
| |
|
||||| |||||| ||||||||||| ||||||||||| | |||||||||| |||||||||||| || || ||| |||||||||||||||||| |
|
|
| T |
9103092 |
tctttgcagcaacaatctctaaaatcataactccaagaatataaatgtcctatttttcagaaatctgttcatacatcacatattctggagacatat |
9102997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 463
Target Start/End: Original strand, 454591 - 454680
Alignment:
| Q |
374 |
atattgctaggtttgagatcccgatgtataactttgagtcgagaatgatcatgcaaataaagaatcccttgaacaattcctcctatgata |
463 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| |||| || |||||||| || ||| |||||||| | |||| || ||||||||| |
|
|
| T |
454591 |
atattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatccctcgtgcaataccacctatgata |
454680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 456
Target Start/End: Original strand, 470001 - 470198
Alignment:
| Q |
262 |
aacttacaatgttccaacaattctatttgtact---tccctcgtcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttaggaatcata |
358 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| ||| | |||||| ||| |||| |||| ||||||||||||||||| ||||| ||| |||| |
|
|
| T |
470001 |
aacttactatgttcccacaattctatttgtactgcttccttgttcttgatcgattgcaactattcttgccaaaccaaaatctgatatttttggattcatt |
470100 |
T |
|
| Q |
359 |
tttttgtccagtagaatattgctaggtttgagatcccgatgtataactttgagtcgagaatgatcatgcaaataaagaatcccttgaacaattcctcc |
456 |
Q |
| |
|
|| | || | | | |||||||||||||||||| |||||||| ||||| |||| |||| ||||| || |||||||| ||| | |||||||||| |
|
|
| T |
470101 |
ttgtcatctaacaatacattgctaggtttgagatctcgatgtatgactttaagtcttgaatactcatgtaagtaaagaattcctcgtgcaattcctcc |
470198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 19939334 - 19939301
Alignment:
| Q |
132 |
gcattgcatattctggagacatataaccactgca |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
19939334 |
gcattgcatattctggagacatataaccactgca |
19939301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 19970473 - 19970440
Alignment:
| Q |
132 |
gcattgcatattctggagacatataaccactgca |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
19970473 |
gcattgcatattctggagacatataaccactgca |
19970440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 2711944 - 2712035
Alignment:
| Q |
74 |
atctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgcccaagcattgcatattctggagacatataaccactgca |
165 |
Q |
| |
|
||||| || |||| ||||||||||||| |||| || ||||| || ||||| ||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
2711944 |
atctccaagagcaaaactccaaaactaaaaatatctgatttctctgaaaacaaccctttcattgcatattctggagacatatatccactgca |
2712035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 31196228 - 31196268
Alignment:
| Q |
132 |
gcattgcatattctggagacatataaccactgcaaaataaa |
172 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
31196228 |
gcattgcatattctggagccatatatccactgcaacataaa |
31196268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 31214840 - 31214880
Alignment:
| Q |
132 |
gcattgcatattctggagacatataaccactgcaaaataaa |
172 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
31214840 |
gcattgcatattctggagccatatatccactgcaacataaa |
31214880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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