View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3828_high_12 (Length: 390)
Name: NF3828_high_12
Description: NF3828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3828_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 22073246 - 22073013
Alignment:
| Q |
18 |
atgtttcagatgcgaatgcagaaagtccagaacctacaattccatgtaccagttcaggttcaacacatgagtcatttcagtccaatatctcctctgaatc |
117 |
Q |
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| T |
22073246 |
atgtttcagatgcgaatgcagaaagtccagaacctacaattccatgtaccagttcaggttcaacacatgagtcatttgagtccaatatctcctctgaatc |
22073147 |
T |
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| Q |
118 |
agacacagatgaggaccttaattccgaggaacacacagattcagatttagattctgaagatgatatagctgaacaaaataaaaatgccacaaacatacaa |
217 |
Q |
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| T |
22073146 |
agacacagatgaggaccttgattccgaggaacacacggattcagattcagattctgaagatgatatagctgaacaaaatacaaatgccacaaacatacaa |
22073047 |
T |
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| Q |
218 |
gtaggagaacctgcattacaaggtaatataatct |
251 |
Q |
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| T |
22073046 |
gtaggagaacctgcattacaaggtaatataatct |
22073013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 307 - 390
Target Start/End: Complemental strand, 22072871 - 22072785
Alignment:
| Q |
307 |
ttttcatcttttcaaattgtgttggtttatgtttcatatctataaacaa---caaattttctaccaacatatactgtattacacatt |
390 |
Q |
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| T |
22072871 |
ttttcatcttttcaaattgtgttggtttatgtttcatatctataaacaacttcaaatttcctaccaacatatactgtattacacatt |
22072785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 309 - 390
Target Start/End: Complemental strand, 22046463 - 22046379
Alignment:
| Q |
309 |
ttcatcttttcaaattgtgttggtttatgtttcatatctataaacaa---caaattttctaccaacatatactgtattacacatt |
390 |
Q |
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| T |
22046463 |
ttcatcttttcaaattgtgttggtttatgtatcatatctataaacaacttcaaatttcctaccagcatatattgtattgcacatt |
22046379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 293
Target Start/End: Complemental strand, 22072955 - 22072921
Alignment:
| Q |
259 |
taatttgtttctttatttagtaaaattctaaggat |
293 |
Q |
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| T |
22072955 |
taatttgtttctttatttagtaaaattttaaggat |
22072921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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