View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3828_high_15 (Length: 315)
Name: NF3828_high_15
Description: NF3828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3828_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 5 - 305
Target Start/End: Original strand, 17534968 - 17535268
Alignment:
| Q |
5 |
aactctaatgctccctttgccttcaacttcaacaaattctccatttcctaatttaacttttgagccaaatgagggatcaatgtcaatgaaagcttcttta |
104 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17534968 |
aactctaatgctccctttgccttcaacttcaaaaaattctccatttcctaatttaacttttgagccaaatgagggatcaatgtcaatgaaagcttcttta |
17535067 |
T |
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| Q |
105 |
tctcctgtcatatgattgctacacccgctgtccaagtaccacacatttttgtactcttcagttgccttgtgacaagcaaagaacaagttgacttcattgt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17535068 |
tctcctgtcatatgattgctacacccgctgtccaagtaccacacatttttgtactcttgagttgccttgtgacaagcaaaaaacaagttgacttcattgt |
17535167 |
T |
|
| Q |
205 |
tttctgcttctgcaaatgctacatgctgctgattttgaaaccgacactctttctgcacatgtctaaaccttttgcaattatgacattgtggcttgccttt |
304 |
Q |
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||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||| |
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| T |
17535168 |
tttctgcttctacaaaagctacatgctgctgattttgcaaccgacactctttctgcacatgtccaaaccttttgaaattatgacattgtggcttaccttt |
17535267 |
T |
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| Q |
305 |
g |
305 |
Q |
| |
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| |
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| T |
17535268 |
g |
17535268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 154
Target Start/End: Complemental strand, 26408141 - 26407993
Alignment:
| Q |
6 |
actctaatgctccctttgccttcaacttcaacaaattctccatttcctaatttaacttttgagccaaatgagggatcaatgtcaatgaaagcttctttat |
105 |
Q |
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| T |
26408141 |
actccaatgcttcctttccctttcacttcgacatgttctccatttcccaatttaacttttgagccacatgaagaatcaatgtttataaatgctcccttct |
26408042 |
T |
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| Q |
106 |
ctcctgtcatatgattgctacacccgctgtccaagtaccacacattttt |
154 |
Q |
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| T |
26408041 |
gtccggtcatatggttgctacagccgctgtccaaataccatacattttt |
26407993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 154
Target Start/End: Original strand, 27208898 - 27209046
Alignment:
| Q |
6 |
actctaatgctccctttgccttcaacttcaacaaattctccatttcctaatttaacttttgagccaaatgagggatcaatgtcaatgaaagcttctttat |
105 |
Q |
| |
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|||| |||||| ||||| |||| ||||| ||| |||||||||||| |||||||||||||||||| |||| | |||||||| || || ||| | || | |
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| T |
27208898 |
actccaatgcttcctttccctttcacttcgacatgttctccatttcccaatttaacttttgagccacatgaagaatcaatgtttataaatgctcccttct |
27208997 |
T |
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| Q |
106 |
ctcctgtcatatgattgctacacccgctgtccaagtaccacacattttt |
154 |
Q |
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| T |
27208998 |
gtccggtcatatggttgctacagccgctgtccaaataccatacattttt |
27209046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 154
Target Start/End: Original strand, 26900485 - 26900633
Alignment:
| Q |
6 |
actctaatgctccctttgccttcaacttcaacaaattctccatttcctaatttaacttttgagccaaatgagggatcaatgtcaatgaaagcttctttat |
105 |
Q |
| |
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|||| |||||| ||||| |||| ||||| ||| |||||||||||| |||||||||||||||||| |||| | |||||||| || || ||| | || | |
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| T |
26900485 |
actccaatgcttcctttccctttcacttcgacatgttctccatttcccaatttaacttttgagccacatgaagaatcaatgtttataaatgctcccttct |
26900584 |
T |
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| Q |
106 |
ctcctgtcatatgattgctacacccgctgtccaagtaccacacattttt |
154 |
Q |
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||| |||||||| |||||||| ||||||||||| ||||| |||||||| |
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| T |
26900585 |
gtccggtcatatggttgctacagccgctgtccaaataccatacattttt |
26900633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 154
Target Start/End: Complemental strand, 23676255 - 23676107
Alignment:
| Q |
6 |
actctaatgctccctttgccttcaacttcaacaaattctccatttcctaatttaacttttgagccaaatgagggatcaatgtcaatgaaagcttctttat |
105 |
Q |
| |
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|||| |||||| ||||| |||| ||||| ||| |||||||||||| |||||||||||||||||| |||| | |||||||| || || ||| | || | |
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| T |
23676255 |
actccaatgcttcctttccctttcacttcgacatgttctccatttcccaatttaacttttgagccacatgaagaatcaatgtttataaatgctcccttct |
23676156 |
T |
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| Q |
106 |
ctcctgtcatatgattgctacacccgctgtccaagtaccacacattttt |
154 |
Q |
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||| |||||||| |||||||| ||||||||||| ||||| |||||||| |
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| T |
23676155 |
gtccggtcatatggttgctacagccgctgtccaaataccatacattttt |
23676107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 154
Target Start/End: Complemental strand, 24048531 - 24048383
Alignment:
| Q |
6 |
actctaatgctccctttgccttcaacttcaacaaattctccatttcctaatttaacttttgagccaaatgagggatcaatgtcaatgaaagcttctttat |
105 |
Q |
| |
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|||| |||||| ||||| |||| ||||| ||| |||||||||||| |||||||||||||||||| |||| | |||||||| || || ||| | || | |
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| T |
24048531 |
actccaatgcttcctttccctttcacttcgacatgttctccatttcccaatttaacttttgagccacatgaagaatcaatgtttataaatgctcccttct |
24048432 |
T |
|
| Q |
106 |
ctcctgtcatatgattgctacacccgctgtccaagtaccacacattttt |
154 |
Q |
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||| |||||||| |||||||| ||||||||||| ||||| |||||||| |
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| T |
24048431 |
gtccggtcatatggttgctacagccgctgtccaaataccatacattttt |
24048383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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