View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3828_high_17 (Length: 281)
Name: NF3828_high_17
Description: NF3828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3828_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 46587753 - 46587487
Alignment:
| Q |
1 |
ccaaaattaatccatcaatcaaatgatgaagaaaaaatatgtatatatgcgcaaacaatggacacacagcgacatttgataataatttgnnnnnnn-tca |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
46587753 |
ccaaaattaatccatcaatcaaatgatgaagaaaaaatatgtatatatgcgcaaacaatggacacacagcgacctttgataataatttgaaaaaaaatca |
46587654 |
T |
|
| Q |
100 |
aagtgattaaatataattaaatgcgttggtgtcgtgttagtgtcnnnnnnnnnnnnntgttaattgat-atttgtgatgatacatacccaatgtgtcatt |
198 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46587653 |
aagtgattaaatataattaaatgtgttggtgttgtgttagtgtcaaaaaacaaaaa-tgttaattgattatttgtgatgatacatacccaatgtgtcatt |
46587555 |
T |
|
| Q |
199 |
tatttggaaggggctatttttgatggcccattgagtgtagttagtgcctgcacgccaaccttcagagt |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46587554 |
tatttggaaggggctatttttgatggcccattgagtgtagttagtgcctgcacgccaaccttcagagt |
46587487 |
T |
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