View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3828_high_19 (Length: 270)
Name: NF3828_high_19
Description: NF3828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3828_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 17534744 - 17534987
Alignment:
| Q |
18 |
aaactgatatttttctcataattaagagaaagtggaaagcttctgcttttggtcattttcacaacagcaacaactcttctttttgaatcaaaaactctgc |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
17534744 |
aaacagatatttttctcataattaagagaaagtggaaagcttctgcttttggtcatttacacaaaagcaacaactcttctttttgaatcaaaaacactgc |
17534843 |
T |
|
| Q |
118 |
actcttgattctcaaattgaagagaataatcatgctccaaaagttgcccaacactcaataaattctcatctagctttggaacataaagagtatcatgaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17534844 |
actcttgattctcaaattgaagagaataaccatgctccaaaagttgcccaacactcaataaattctcatctagctttggaacataaagagtatcatgaat |
17534943 |
T |
|
| Q |
218 |
taccttacatccttgctttgttgaaactctaatgctccctttgc |
261 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17534944 |
taccttacatccttgctttgttgcaactctaatgctccctttgc |
17534987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 169
Target Start/End: Complemental strand, 26408358 - 26408215
Alignment:
| Q |
26 |
atttttctcataattaagagaaagtggaaagcttctgcttttggtcattttcacaacagcaacaactcttctttttgaatcaaaaactctgcactcttga |
125 |
Q |
| |
|
|||||||||||| | || ||| ||||||||||| ||| | | ||||| ||||||| |||||| |||||||| ||| ||||||| |||||||||| | |
|
|
| T |
26408358 |
atttttctcatagtcaaaagatagtggaaagctcctgttgctagtcatcttcacaatggcaacacttcttctttctgagtcaaaaattctgcactctcta |
26408259 |
T |
|
| Q |
126 |
ttctcaaattgaagagaataatcatgctccaaaagttgcccaac |
169 |
Q |
| |
|
|| ||||| | |||||||| | ||||||| |||||| ||||| |
|
|
| T |
26408258 |
ttttcaaagtttagagaatagccgtgctccagaagttgtccaac |
26408215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 27208681 - 27208824
Alignment:
| Q |
26 |
atttttctcataattaagagaaagtggaaagcttctgcttttggtcattttcacaacagcaacaactcttctttttgaatcaaaaactctgcactcttga |
125 |
Q |
| |
|
|||||||||||| | || ||| ||||||||||| ||| | | ||||| ||||||| |||||| |||||||| ||| ||||||| |||||||||| | |
|
|
| T |
27208681 |
atttttctcatagtcaaaagatagtggaaagctcctgttgctagtcatcttcacaatggcaacacttcttctttctgagtcaaaaattctgcactctcta |
27208780 |
T |
|
| Q |
126 |
ttctcaaattgaagagaataatcatgctccaaaagttgcccaac |
169 |
Q |
| |
|
|| ||||| | |||||||| | |||||||||||||| ||||| |
|
|
| T |
27208781 |
ttttcaaagtttagagaatagccgtgctccaaaagttgtccaac |
27208824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 23676472 - 23676324
Alignment:
| Q |
26 |
atttttctcataattaagagaaagtggaaagcttctgcttttggtcattttcacaacagcaacaactcttctttttgaatcaaaaactctgcactcttga |
125 |
Q |
| |
|
|||||||||||| | || ||| ||||||||||| ||| | | ||||| ||||||| |||||| |||||||| ||| ||||||| |||||||||| | |
|
|
| T |
23676472 |
atttttctcatagtcaaaagatagtggaaagctcctgttgctagtcatcttcacaatggcaacacttcttctttctgagtcaaaaattctgcactctcta |
23676373 |
T |
|
| Q |
126 |
ttctcaaattgaagagaataatcatgctccaaaagttgcccaacactca |
174 |
Q |
| |
|
|| ||||| | |||||||| | ||||||| |||||| ||||| |||| |
|
|
| T |
23676372 |
ttttcaaagtttagagaatagccgtgctccagaagttgtccaacgctca |
23676324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 169
Target Start/End: Complemental strand, 24048748 - 24048605
Alignment:
| Q |
26 |
atttttctcataattaagagaaagtggaaagcttctgcttttggtcattttcacaacagcaacaactcttctttttgaatcaaaaactctgcactcttga |
125 |
Q |
| |
|
|||||||||||| | || ||| ||||||||||| ||| | | ||||| ||||||| |||||| |||||||| ||| ||||||| |||||||||| | |
|
|
| T |
24048748 |
atttttctcatagtcaaaagatagtggaaagctcctgttgctagtcatcttcacaatggcaacacttcttctttctgagtcaaaaattctgcactctcta |
24048649 |
T |
|
| Q |
126 |
ttctcaaattgaagagaataatcatgctccaaaagttgcccaac |
169 |
Q |
| |
|
|| ||||| | |||||||| | ||||||| |||||| ||||| |
|
|
| T |
24048648 |
ttttcaaagtttagagaatagccgtgctccagaagttgtccaac |
24048605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 26900268 - 26900411
Alignment:
| Q |
26 |
atttttctcataattaagagaaagtggaaagcttctgcttttggtcattttcacaacagcaacaactcttctttttgaatcaaaaactctgcactcttga |
125 |
Q |
| |
|
|||||||||||| | || ||| ||||||||||| ||| | | ||||| ||||||| |||||| |||||||| ||| ||||||| |||||||||| | |
|
|
| T |
26900268 |
atttttctcatagtcaaaagatagtggaaagctcctgttgctagtcatcttcacaatggcaacacttcttctttctgagtcaaaaattctgcactctcta |
26900367 |
T |
|
| Q |
126 |
ttctcaaattgaagagaataatcatgctccaaaagttgcccaac |
169 |
Q |
| |
|
|| ||||| | |||||||| | ||||||| |||||| ||||| |
|
|
| T |
26900368 |
ttttcaaagtttagagaatagccgtgctccagaagttgtccaac |
26900411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University