View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3828_high_24 (Length: 250)
Name: NF3828_high_24
Description: NF3828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3828_high_24 |
 | |
|
| [»] scaffold0197 (1 HSPs) |
| | |
|
| [»] scaffold0006 (2 HSPs) |
| | |
|
| [»] scaffold0078 (1 HSPs) |
| | |
|
| [»] scaffold0259 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 26401094 - 26400859
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26401094 |
ttgctctcaaatgcctctttgaagtttctaggctccgagtcttgcatatcttcagccgcatttagagcaaaacacaccaagtccgcataaccatatctac |
26400995 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26400994 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
26400895 |
T |
|
| Q |
201 |
ttctacataatctttcttcaagtttcatgtgttgtc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
26400894 |
ttctacataatctttcttcaagtttcatgtgttgtc |
26400859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 26298725 - 26298928
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||| | |||||||||||||||||||||||||| ||||||| ||||||||||||||| | |
|
|
| T |
26298725 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgaacatcttcagccgcatttagagcaaaacaaaccaagttcgcataaccatatcttc |
26298824 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
26298825 |
taggagccgtaatggtcctcctttctctatctctagccaagagataatccggatccactaccggttgtgttccacttgtattcgatgttgaagcttcatc |
26298924 |
T |
|
| Q |
201 |
ttct |
204 |
Q |
| |
|
|||| |
|
|
| T |
26298925 |
ttct |
26298928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 10687008 - 10686801
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
10687008 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgcacatcttccgccgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
10686909 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
10686908 |
taggagccgtaatggtccttctttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgttgaagcttcatc |
10686809 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
10686808 |
ttctacat |
10686801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 35742732 - 35742939
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | |||||||||| ||| | ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
35742732 |
ttgctctcaaatgcctccttgaagtttctaggctctgagtcttgcacatccttcgccgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
35742831 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35742832 |
taggagccgtaatggtccttctttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatc |
35742931 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
35742932 |
ttctacat |
35742939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 18868414 - 18868207
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
|||||||||||||| || | |||||||||||| | ||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
18868414 |
ttgctctcaaatgcttccttgaagtttctaggctccgagtcttgcacatcttcagctacatttagagcaaaacacaccaagtccgcataaccgaatctct |
18868315 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| |||||||||||| || ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
18868314 |
taggagtcgtaatggtccttctctctctatctctagccaagagatactccggatccactactggttgagttccacttgtatctgatgttgaagcttcatc |
18868215 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
18868214 |
ttctacat |
18868207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 26311982 - 26312130
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||| | |||||||||||||||||||||||||| ||||||| ||||||||||||||| | |
|
|
| T |
26311982 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgaacatcttcagccgcatttagagcaaaacaaaccaagttcgcataaccatatcttc |
26312081 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatc |
149 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26312082 |
taggagccgtaatggtcctcctttctctatctctagccaagagataatc |
26312130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 33035677 - 33035583
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccata |
95 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33035677 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgcacatcttcagccacatttagagcaaaacacaccaagtccgcataaccata |
33035583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 28835645 - 28835852
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||| | ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28835645 |
ttgctctcaaatgcctctttgaagtttctaggctccgagtcttgcacatcttcagccgcatttagagcaaaacacaccaagtccgcataaccatatctac |
28835744 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
28835745 |
taggagccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactaccggttgagtttcacttgtatccgatgtcgaagcttcatc |
28835844 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
28835845 |
ttctacat |
28835852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 24558328 - 24558114
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
24558328 |
ttgctctcaaatgcctctttaaagtttctaggctccgagtcttgcacatcttcagccgcatttagagaaaaacacaccaagtccgcataaccatatctac |
24558229 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
24558228 |
tagaagccgtaatggtcctcctttctctatctctatccaaaagataatcaggatccactaccggttgagttccacttgtatccgatgttgaagcttcatc |
24558129 |
T |
|
| Q |
201 |
ttctacataatcttt |
215 |
Q |
| |
|
|||| ||| |||||| |
|
|
| T |
24558128 |
ttcttcatcatcttt |
24558114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 24599360 - 24599146
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
24599360 |
ttgctctcaaatgcctctttaaagtttctaggctccgagtcttgcacatcttcagccgcatttagagaaaaacacaccaagtccgcataaccatatctac |
24599261 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
24599260 |
tagaagccgtaatggtcctcctttctctatctctatccaaaagataatcaggatccactaccggttgagttccacttgtatccgatgttgaagcttcatc |
24599161 |
T |
|
| Q |
201 |
ttctacataatcttt |
215 |
Q |
| |
|
|||| ||| |||||| |
|
|
| T |
24599160 |
ttcttcatcatcttt |
24599146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 28805466 - 28805259
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
28805466 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgcacatcttccgccgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
28805367 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28805366 |
taggagccgtaatggtccttctttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatc |
28805267 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
28805266 |
ttctacat |
28805259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 31399736 - 31399529
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
31399736 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgcacatcttccgccgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
31399637 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31399636 |
taggagccgtaatggtccttctttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatc |
31399537 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
31399536 |
ttctacat |
31399529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 27447166 - 27447373
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
27447166 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgcacatcttccgccgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
27447265 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
27447266 |
taggagccgtaatggtccttctttctctatctctagccaatagatactcaggatccactaccggttgagttccactagtatccgatgttgaagcttcatc |
27447365 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
27447366 |
ttctacat |
27447373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 43594464 - 43594671
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
43594464 |
ttgctctcaaatgcctccttgaagtttctaggctcagagtcttgcacatcttccgccgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
43594563 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||| | |||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
43594564 |
taggagccgtaatggtcattctttctctatctctagccaatagatactcaggatccactaccggttgagttccactagtatccgatgtcgaagcttcatc |
43594663 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
43594664 |
ttctacat |
43594671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 43627258 - 43627465
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
43627258 |
ttgctctcaaatgcctccttgaagtttctaggctcagagtcttgcacatcttccgccgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
43627357 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||| | |||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
43627358 |
taggagccgtaatggtcattctttctctatctctagccaatagatactcaggatccactaccggttgagttccactagtatccgatgtcgaagcttcatc |
43627457 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
43627458 |
ttctacat |
43627465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 33788699 - 33788906
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||||| || || | ||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
33788699 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgcacgtcctccgtcgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
33788798 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33788799 |
taggagccgtaatggtccttctttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatc |
33788898 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
33788899 |
ttctacat |
33788906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 37559337 - 37559134
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
37559337 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgcacatcttccgccgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
37559238 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| ||||| ||||| | ||||||||| || ||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
37559237 |
taggagccgtaatggtccttctttctctatctcttgccaatagatacttaggatccaccaccggttgagttccacttgtatccgatatcgaagcttcatc |
37559138 |
T |
|
| Q |
201 |
ttct |
204 |
Q |
| |
|
|||| |
|
|
| T |
37559137 |
ttct |
37559134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 5145251 - 5145464
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5145251 |
ttgctatcaaatgcctctttgaagtttctaggctccgagtcttgcacatcttcagccgcatttagagcaaaacaaaccaagtccgcataaccatatctac |
5145350 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5145351 |
taggagccgtaatggtcctcctttctctatctctagccaagagagaatcaggatccactaccggttgagttccacttgtatctgatgtcgaagcttcatc |
5145450 |
T |
|
| Q |
201 |
ttctacataatctt |
214 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
5145451 |
ttctacatcatctt |
5145464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 16626736 - 16626523
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | | ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16626736 |
ttgctctcaaatgcctctttaaagtttctaggctccaagtcttgcacatcttcagccgcatttagagcaaaacacaccaagtccgcataaccatatctac |
16626637 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
16626636 |
taggagccgtaatggtcctcctttctctatctctagccaagagataatcaggatccactaccggttgagttccactagtatccgatgttgaagcttcatc |
16626537 |
T |
|
| Q |
201 |
ttctacataatctt |
214 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
16626536 |
ttctacatcatctt |
16626523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 9227145 - 9226938
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||||| |||||| ||||||||||||||||||| ||||||||| |||||||| |||| |
|
|
| T |
9227145 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgcacatcttccgccgcatttagagcaaaacacaccaagtctgcataaccgaatctct |
9227046 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9227045 |
taggagccgtaatggtccttctttctctatctctagccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatc |
9226946 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
9226945 |
ttctacat |
9226938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 18857919 - 18858126
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
18857919 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgcacatcttccgccgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
18858018 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
18858019 |
taggagccgtaatggtccttctttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgttgaagcttcatc |
18858118 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
18858119 |
ttctacat |
18858126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 39485955 - 39485742
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||| ||||| || || |||||||||||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39485955 |
ttgctcttaaatgtctttttgaagtttctaggttccgagtcttgcacatcttcagccacatttagagcaaaacacaccaagtccgcataaccatatctac |
39485856 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39485855 |
caggagccgtaatggtcctcctttctctatctctagccaagagataatcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatc |
39485756 |
T |
|
| Q |
201 |
ttctacataatctt |
214 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
39485755 |
ttctacatcatctt |
39485742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 39485092 - 39485295
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||| ||||||||| | |||||||||||| | ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
39485092 |
ttgctcttaaatgcctccttgaagtttctaggctccgagtcttgcacatcttcagccgcatttagagcaaaacacaccaagttcgcataaccatatctac |
39485191 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39485192 |
taggagccgtaatggtcctcctttctctatctctagccaagagataatcaggatccactaccagttgagttccacttgtatccgatgtcgaagcttcatc |
39485291 |
T |
|
| Q |
201 |
ttct |
204 |
Q |
| |
|
|||| |
|
|
| T |
39485292 |
ttct |
39485295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 31058301 - 31058515
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | |||||||| || |||||||||| || ||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
31058301 |
ttgctctcaaatgcctctttaaagtttctaggctccgagtcttccacatcttcagccacagttagagcaaaatacaccaagtctgcataaccatatctac |
31058400 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31058401 |
taggagtcgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatc |
31058500 |
T |
|
| Q |
201 |
ttctacataatcttt |
215 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
31058501 |
ttctacatcatcttt |
31058515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 19346621 - 19346828
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||||| ||| || ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
19346621 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgcacatcctccgccgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
19346720 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19346721 |
taggagccgtaatggtccttctttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatc |
19346820 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
19346821 |
ttctacat |
19346828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 1308214 - 1308421
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1308214 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgcatatcttcagctgcatttagagcaaaacacaccaagtccgcataaccatatctac |
1308313 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
1308314 |
taggggccgtaatggtcctcctttctctatctctagccaagagataatccggatccactaccggttgagttccacttgtatccgatgttgaagcttcatc |
1308413 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
1308414 |
ttctacat |
1308421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 2674964 - 2674757
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
2674964 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgcacatcttccgccgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
2674865 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2674864 |
taggagccgtaatggtccttctttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatc |
2674765 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
2674764 |
ttctacat |
2674757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 3326270 - 3326069
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||| | ||||||||||| ||||||||||||||||| |||||||| || ||||| |||||||||||||||| |
|
|
| T |
3326270 |
ttgctctcaaatgcctctttgaagtttctaggctccgagtcttgcacatcttcagccgcatttaaagcaaaacacatcaagtatgcataaccatatctac |
3326171 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
3326170 |
taggagccgtaatggtcctcctttctttatctctagctaaaagatagtcaggatccactaccggttgagttccacttgtatctgatgttgaagcttcatc |
3326071 |
T |
|
| Q |
201 |
tt |
202 |
Q |
| |
|
|| |
|
|
| T |
3326070 |
tt |
3326069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22171052 - 22170845
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
22171052 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgcacatcttccgccgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
22170953 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| | ||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22170952 |
taggagccgtaatggtccttctttctctatcttttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatc |
22170853 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
22170852 |
ttctacat |
22170845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 32477683 - 32477890
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||||| ||| || ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
32477683 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgcacatcctccgccgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
32477782 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
32477783 |
taggagccgtaatggtccttctttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgttgaagcttcatc |
32477882 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
32477883 |
ttctacat |
32477890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 8514437 - 8514644
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||| ||| | |||||||||||| | ||||||||||| ||| || ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
8514437 |
ttgctctcaaatgtctccttgaagtttctaggctccgagtcttgcacatcctccgccgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
8514536 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
8514537 |
taggagccgtaatggtccttctttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgttgaagcttcatc |
8514636 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
8514637 |
ttctacat |
8514644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 16257412 - 16257506
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccata |
95 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| | ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
16257412 |
ttgctctcaaatgccacttttaagtttctaggctccgagtcttgcacatcttcagccgcatttagagcaaaacacaccaagttcgcataaccata |
16257506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 19369429 - 19369222
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19369429 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgcacatcttcaaccgcatttagagcaaaacacaccaagtccgcataaccatatctac |
19369330 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
19369329 |
taggagccgtaatggtcctcctttctctatctctagccaagagataatccggatccactaccggttgagtttcacttgtatccgatgtcgaagcttcatc |
19369230 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
19369229 |
ttctacat |
19369222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 41395594 - 41395801
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | |||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||| |||| |
|
|
| T |
41395594 |
ttgctctcaaatgcctccttgaagtttctaggctctgagtcttgcacatcttccgccgcatttagagcaaaacacacaaagtccgcataactgaatctct |
41395693 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41395694 |
taggagccgtaattgtccttctttctctatctctagccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatc |
41395793 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
||| |||| |
|
|
| T |
41395794 |
ttccacat |
41395801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 13600210 - 13600359
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| | |||||||| || ||||||| |||||||||||||||||| || ||||| | ||||||||||||||| |
|
|
| T |
13600210 |
ttgctctcaaatgtctctttgaagtttctaggctccgagtcttacacatcttcaaccgcatttagagcaaaacacaacaagtgcacataaccatatctac |
13600309 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatca |
150 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
13600310 |
taggagccgtaatggtcctcctttctctatctctagccaagagatgatca |
13600359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 47701781 - 47701690
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataacc |
92 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| | | |||||| || |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
47701781 |
ttgctctcaaatgcctctttgaaatttctaggctccaagtcttacacatcttcagccgcatttagagcaaaacacaccaagtccgcataacc |
47701690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 9187889 - 9187682
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||| | ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9187889 |
ttgctctcaaatgcctctttgaagtttctaggctccgagtcttgcacatctttagccgcatttagagcaaaacacaccaagtccgcataaccatatctac |
9187790 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||| ||| |||||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
9187789 |
taggagccgtaatggtccttctttctctatctctagtcaagagataatccggatccactaccggttgagttccacttgtatccgacgtcgaagcttcatc |
9187690 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
9187689 |
ttctacat |
9187682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 18411000 - 18411207
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||| ||||||||| | |||||||||||| | ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18411000 |
ttgctcttaaatgcctccttgaagtttctaggctccgagtcttgcacatcttcagccgcatttagagcaaaacacaccaagtccgcataaccatatctac |
18411099 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
18411100 |
taggagccgtaatggtccttctttctctatctctagccaagagataatccggatccactacgggttgagttccacttgtatccaatgtcgaagcttcatc |
18411199 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
18411200 |
ttctacat |
18411207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 4 - 214
Target Start/End: Complemental strand, 24272641 - 24272431
Alignment:
| Q |
4 |
ctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctactag |
103 |
Q |
| |
|
|||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||| | |
|
|
| T |
24272641 |
ctctcaaatgcctcttttaagtttctaggctccgagtcttgcacatcttcagccgcatttagagcaaaacacaccaagttcgcataaccatatctactcg |
24272542 |
T |
|
| Q |
104 |
gaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatcttc |
203 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24272541 |
gagccgtaatggtcctcctttctctatctttagccaagagataatcaagatccactaccggttgagttccacttgtatccgatgtcgaagcttcatcttc |
24272442 |
T |
|
| Q |
204 |
tacataatctt |
214 |
Q |
| |
|
||||| ||||| |
|
|
| T |
24272441 |
tacatcatctt |
24272431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 24264067 - 24263860
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
24264067 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgcacatcttccgccgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
24263968 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
24263967 |
taggagccgtaatggtccttctttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgttgaagcttcatc |
24263868 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
24263867 |
ttctacat |
24263860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 21986262 - 21986470
Alignment:
| Q |
1 |
ttgctctcaaatgcctctta-gaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatcta |
99 |
Q |
| |
|
|||||||||| ||||| || |||||||||||| | |||||||||| ||||||||| |||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
21986262 |
ttgctctcaattgcctgttttgaagtttctaggctctgagtcttgcacatcttcagctgcatttagagcaaaacacaccaagtccgtataaccatatcta |
21986361 |
T |
|
| Q |
100 |
ctaggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcat |
199 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21986362 |
ctaggagccgtaatggtccttctttctctatctctagccaatacatactcaggatccactatcggttgagttccacttgtatccgatgtcgaagcttcat |
21986461 |
T |
|
| Q |
200 |
cttctacat |
208 |
Q |
| |
|
||||||||| |
|
|
| T |
21986462 |
cttctacat |
21986470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 16882270 - 16882477
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||||| ||| || ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
16882270 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgcacatcctccgccgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
16882369 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
16882370 |
taggagccgtaatggtccttctttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgttgaagcttcatc |
16882469 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
16882470 |
ttctacat |
16882477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 21642033 - 21642239
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | | |||| |||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| | |
|
|
| T |
21642033 |
ttgctctcaaatgcctccttgaagtttctaggctccaagtcatgcacatcttcagccgcatttagagaaaaacacaccaagtccgcataaccatatctcc |
21642132 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| |||||||| |||| |||||| ||||||||| || ||||| ||||||| ||||||||||| |
|
|
| T |
21642133 |
taggagccgtaatggtccttctttctctatctctagccaagagataatccggattcactaccggttgagtttcatttgta-tcgatgttgaagcttcatc |
21642231 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
21642232 |
ttctacat |
21642239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 17053 - 16846
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
17053 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgcacatcttccgccgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
16954 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
16953 |
taggagccgtaatggtccttctttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcttcatc |
16854 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
16853 |
ttctacat |
16846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 14740316 - 14740109
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| ||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
14740316 |
ttgctctcaaatgcctccttgaagtttctaggcttcgagtcttgcacatcttccgccgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
14740217 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| || || |||||||||||||| ||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
14740216 |
taggagccgtaatggtccttctttctctatctctagccaataggtactcaggatccactaccggttgagttccacttgtatccgatgtcgaagcgtcatc |
14740117 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
14740116 |
ttctacat |
14740109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 33333820 - 33333613
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | ||||| |||||| | ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
33333820 |
ttgctctcaaatgcctccttgaagtctctaggctccgagtcttgcacatcttccgccgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
33333721 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
33333720 |
taggagccgtaatggtccttctttctctatctcttgccaatagatactcaggatccactaccggttgagttccacttgtatccgatgttgaagcttcatc |
33333621 |
T |
|
| Q |
201 |
ttctacat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
33333620 |
ttctacat |
33333613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 24434066 - 24433862
Alignment:
| Q |
1 |
ttgctctcaaatgcctct---tagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatc |
97 |
Q |
| |
|
||||||||||||||||| | ||||||||| || | |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
24434066 |
ttgctctcaaatgcctcgaccttgaagtttcttggctccgagtctt-catatcttcagccgcatttagagcataacacaccaagtccgcataaccatatc |
24433968 |
T |
|
| Q |
98 |
tactaggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttc |
197 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||| | | ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
24433967 |
ttttaggtgccgtaatggtcctcctttctctatctcttccaagaagataatcaggatccactaccagttgagttccacttgtattcgatgttgaagcttc |
24433868 |
T |
|
| Q |
198 |
atcttc |
203 |
Q |
| |
|
|||||| |
|
|
| T |
24433867 |
atcttc |
24433862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 8007 - 8220
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| | |||||||| || ||||||| |||||||||||||||||| || ||||| | ||||||||||||||| |
|
|
| T |
8007 |
ttgctctcaaatgtctctttgaagtttctaggctccgagtcttacacatcttcaaccgcatttagagcaaaacacaacaagtgcacataaccatatctac |
8106 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||| |||||| | |||| ||||||||||| |
|
|
| T |
8107 |
taggagccgtaatggtcctcctttctctatctctagccaagagatgatcaggatccactaccggttgagttccaattgtatccaatgttgaagcttcatc |
8206 |
T |
|
| Q |
201 |
ttctacataatctt |
214 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
8207 |
ttctacatcatctt |
8220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 1 - 64
Alignment:
| Q |
151 |
ggatccactactggttgagttccacttgtattcgatgtcgaagcttcatcttctacataatctt |
214 |
Q |
| |
|
||||||||||| |||||||||||| |||||| | |||| ||||||||||||||||||| ||||| |
|
|
| T |
1 |
ggatccactaccggttgagttccaattgtatccaatgttgaagcttcatcttctacatcatctt |
64 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 34385 - 34580
Alignment:
| Q |
4 |
ctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctactag |
103 |
Q |
| |
|
|||||||||||||| | |||||||||| | || |||||||| |||||| | | |||||||||| ||| |||||| |||||||||||||||| |||| |
|
|
| T |
34385 |
ctctcaaatgcctccttcaagtttctagcctccgggtcttgcaattcttcaactgaatttagagcataacacaccaactccgcataaccatatcatctag |
34484 |
T |
|
| Q |
104 |
gaaccgtaatggtcctcctttctctatctctagccaaaagataatcaggatccactactggttgagttccacttgtattcgatgtcgaagcttcatc |
200 |
Q |
| |
|
| |||||||| |||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34485 |
gtgtcgtaatgg-cctcctttctctatatctagccaaaagatagtcaggatccactattggttgagttccacttgtatccgatgtcgaagcttcatc |
34580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 129 - 1
Alignment:
| Q |
1 |
ttgctctcaaatgcctcttagaagtttctaggtttcgagtcttgcatatcttcagccgcatttagagcaaaacccaccaagtccgcataaccatatctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | ||||||||||| ||| || ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
129 |
ttgctctcaaatgcctccttgaagtttctaggctccgagtcttgcacatcctccgccgcatttagagcaaaacacaccaagtccgcataaccgaatctct |
30 |
T |
|
| Q |
101 |
taggaaccgtaatggtcctcctttctcta |
129 |
Q |
| |
|
||||| ||||||||||||| | ||||||| |
|
|
| T |
29 |
taggagccgtaatggtccttccttctcta |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University