View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3828_high_5 (Length: 458)

Name: NF3828_high_5
Description: NF3828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3828_high_5
NF3828_high_5
[»] chr4 (4 HSPs)
chr4 (139-235)||(28335550-28335645)
chr4 (139-235)||(44787505-44787600)
chr4 (289-374)||(28335688-28335774)
chr4 (289-374)||(44787643-44787729)
[»] scaffold1526 (2 HSPs)
scaffold1526 (1-78)||(376-453)
scaffold1526 (183-235)||(539-591)
[»] chr2 (2 HSPs)
chr2 (1-78)||(3379059-3379136)
chr2 (183-235)||(3378922-3378974)
[»] chr8 (2 HSPs)
chr8 (2-78)||(44496326-44496402)
chr8 (183-235)||(44496188-44496240)
[»] scaffold0642 (2 HSPs)
scaffold0642 (3-78)||(4841-4916)
scaffold0642 (183-234)||(4731-4782)
[»] scaffold0345 (2 HSPs)
scaffold0345 (3-78)||(14754-14829)
scaffold0345 (183-234)||(14643-14694)
[»] scaffold0105 (2 HSPs)
scaffold0105 (3-78)||(24152-24227)
scaffold0105 (183-234)||(24287-24338)
[»] scaffold0016 (2 HSPs)
scaffold0016 (1-78)||(53059-53136)
scaffold0016 (183-235)||(53225-53277)
[»] chr1 (1 HSPs)
chr1 (157-230)||(41866005-41866078)


Alignment Details
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 28335550 - 28335645
Alignment:
Q  139 ttttgttgaagggtaataaaatcaatgaatttttgccacaaaattcaaattaggttagtaagactcataaaatatgaagcaaaacaaagaataaaac 235  Q
    ||||||||||||||||| |||||||||| ||||||||||||  ||||||||||||||| |||||||||||||| ||| | ||| |||||||||||||    
T  28335550 ttttgttgaagggtaatcaaatcaatgagtttttgccacaag-ttcaaattaggttagcaagactcataaaatgtgaggaaaagcaaagaataaaac 28335645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 44787505 - 44787600
Alignment:
Q  139 ttttgttgaagggtaataaaatcaatgaatttttgccacaaaattcaaattaggttagtaagactcataaaatatgaagcaaaacaaagaataaaac 235  Q
    ||||||||||||||||| |||||||||| ||||||||||||  ||||||||||||||| |||||||||||||| ||| | ||| |||||||||||||    
T  44787505 ttttgttgaagggtaatcaaatcaatgagtttttgccacaag-ttcaaattaggttagcaagactcataaaatgtgaggaaaagcaaagaataaaac 44787600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 374
Target Start/End: Original strand, 28335688 - 28335774
Alignment:
Q  289 ttagaatca-aagcgtaatggtggcagtagagctataaaaggtacacagccagatttcactatagataaaatagaggaatgcagtca 374  Q
    ||||||||| |||| ||||||||||| |||||  |||||||||| ||    ||||||||| || |||||||||||||||||||||||    
T  28335688 ttagaatcagaagcataatggtggcaatagagagataaaaggtaaactattagatttcacaatggataaaatagaggaatgcagtca 28335774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 374
Target Start/End: Original strand, 44787643 - 44787729
Alignment:
Q  289 ttagaatca-aagcgtaatggtggcagtagagctataaaaggtacacagccagatttcactatagataaaatagaggaatgcagtca 374  Q
    ||||||||| |||| ||||||||||| |||||  |||||||||| ||    ||||||||| || |||||||||||||||||||||||    
T  44787643 ttagaatcagaagcataatggtggcaatagagagataaaaggtaaactattagatttcacaatggataaaatagaggaatgcagtca 44787729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 376 - 453
Alignment:
Q  1 cttgaaatgaattaattgacatggctcttgaatactaagattgctcttcacagtacatatgctttaatcattacacaa 78  Q
    |||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||| | |||||| ||||||||    
T  376 cttgaaatgaattaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaa 453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 539 - 591
Alignment:
Q  183 tcaaattaggttagtaagactcataaaatatgaagcaaaacaaagaataaaac 235  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  539 tcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaac 591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 3379136 - 3379059
Alignment:
Q  1 cttgaaatgaattaattgacatggctcttgaatactaagattgctcttcacagtacatatgctttaatcattacacaa 78  Q
    |||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||| | |||||| ||||||||    
T  3379136 cttgaaatgaattaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaa 3379059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 3378974 - 3378922
Alignment:
Q  183 tcaaattaggttagtaagactcataaaatatgaagcaaaacaaagaataaaac 235  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||| ||||||||    
T  3378974 tcaaattaggttagtaagactcataaaatgtgaaggaaagcaaataataaaac 3378922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 44496402 - 44496326
Alignment:
Q  2 ttgaaatgaattaattgacatggctcttgaatactaagattgctcttcacagtacatatgctttaatcattacacaa 78  Q
    ||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||| | |||||| ||||||||    
T  44496402 ttgaaatgaattaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaa 44496326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 44496240 - 44496188
Alignment:
Q  183 tcaaattaggttagtaagactcataaaatatgaagcaaaacaaagaataaaac 235  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  44496240 tcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaac 44496188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 4916 - 4841
Alignment:
Q  3 tgaaatgaattaattgacatggctcttgaatactaagattgctcttcacagtacatatgctttaatcattacacaa 78  Q
    |||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||| | |||||| ||||||||    
T  4916 tgaaatgaattaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaa 4841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 4782 - 4731
Alignment:
Q  183 tcaaattaggttagtaagactcataaaatatgaagcaaaacaaagaataaaa 234  Q
    ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  4782 tcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa 4731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 14829 - 14754
Alignment:
Q  3 tgaaatgaattaattgacatggctcttgaatactaagattgctcttcacagtacatatgctttaatcattacacaa 78  Q
    |||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||| | |||||| ||||||||    
T  14829 tgaaatgaattaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaa 14754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 14694 - 14643
Alignment:
Q  183 tcaaattaggttagtaagactcataaaatatgaagcaaaacaaagaataaaa 234  Q
    ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  14694 tcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa 14643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 24152 - 24227
Alignment:
Q  3 tgaaatgaattaattgacatggctcttgaatactaagattgctcttcacagtacatatgctttaatcattacacaa 78  Q
    |||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||| | |||||| ||||||||    
T  24152 tgaaatgaattaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaa 24227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 24287 - 24338
Alignment:
Q  183 tcaaattaggttagtaagactcataaaatatgaagcaaaacaaagaataaaa 234  Q
    ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  24287 tcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa 24338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 53059 - 53136
Alignment:
Q  1 cttgaaatgaattaattgacatggctcttgaatactaagattgctcttcacagtacatatgctttaatcattacacaa 78  Q
    |||||||||||||||||||||||||||||| ||||||| | ||| |||||||||||||||   |||||| ||||||||    
T  53059 cttgaaatgaattaattgacatggctcttgcatactaacaatgcccttcacagtacatataacttaatcgttacacaa 53136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 53225 - 53277
Alignment:
Q  183 tcaaattaggttagtaagactcataaaatatgaagcaaaacaaagaataaaac 235  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  53225 tcaaattaggttagtaagactcataaaatgtgaaggaaatcaaagaataaaac 53277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 41866005 - 41866078
Alignment:
Q  157 aaatcaatgaatttttgccacaaaattcaaattaggttagtaagactcataaaatatgaagcaaaacaaagaat 230  Q
    |||||||||| | ||||||||||| ||||||| ||| || |||| || ||||||||||||| |||| |||||||    
T  41866005 aaatcaatgagtatttgccacaaagttcaaataaggctaataaggctaataaaatatgaagaaaaataaagaat 41866078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University