View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3828_high_6 (Length: 441)
Name: NF3828_high_6
Description: NF3828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3828_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 262 - 374
Target Start/End: Original strand, 22046108 - 22046220
Alignment:
| Q |
262 |
ttatgttggtaggaaaaatggaagttcatgaactaatatgtaattattagatactataataatggaagtagatagtgaaatggatgaaaaaattaggtca |
361 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22046108 |
ttattttggtaggaaaaatggaagttcatgaactaatatgtaattattaaatacgataataatggaagtagatagtgaaatggatgaaaaaattatgtca |
22046207 |
T |
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| Q |
362 |
aaatgtaatctat |
374 |
Q |
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|||| |||||||| |
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| T |
22046208 |
aaatttaatctat |
22046220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 22045986 - 22046092
Alignment:
| Q |
21 |
gagtatcaaagatacgaattactttgtacgactaaagaagagcaaatattcggatcataaattggaagaaaattggnnnnnnnnnntcaattactattgt |
120 |
Q |
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||||||||||| | |||||||||||||||| |||||||||| || |||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
22045986 |
gagtatcaaaggcatgaattactttgtacgaataaagaagaggaagtattcggatcataaattggatgaaaattggaaaaaaaaaatcaattactattgt |
22046085 |
T |
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| Q |
121 |
ggattat |
127 |
Q |
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||||||| |
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| T |
22046086 |
ggattat |
22046092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 22072578 - 22072634
Alignment:
| Q |
284 |
agttcatgaactaatatgtaattattagatactataataatggaagtagatagtgaa |
340 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22072578 |
agttcatgaactaacatgtaattattagatactataataacggaagtagatagtgaa |
22072634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 22046225 - 22046258
Alignment:
| Q |
402 |
tctgcaaattatattaaaaattatggagtattat |
435 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
22046225 |
tctgcaaattatattaaaaattatggattattat |
22046258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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