View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3828_low_1 (Length: 622)

Name: NF3828_low_1
Description: NF3828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3828_low_1
NF3828_low_1
[»] scaffold0781 (2 HSPs)
scaffold0781 (299-608)||(5582-5889)
scaffold0781 (11-192)||(5295-5474)
[»] chr6 (12 HSPs)
chr6 (299-608)||(2217126-2217433)
chr6 (11-192)||(2216838-2217018)
chr6 (12-97)||(24690607-24690691)
chr6 (11-98)||(24798882-24798968)
chr6 (11-98)||(24690356-24690442)
chr6 (12-104)||(18494993-18495084)
chr6 (16-98)||(11644012-11644094)
chr6 (11-94)||(11643754-11643836)
chr6 (11-98)||(18494735-18494820)
chr6 (11-80)||(24798643-24798712)
chr6 (25-82)||(9955643-9955700)
chr6 (25-85)||(9954820-9954880)
[»] scaffold0060 (1 HSPs)
scaffold0060 (11-98)||(22965-23051)
[»] chr4 (12 HSPs)
chr4 (11-98)||(50509388-50509474)
chr4 (11-98)||(39161289-39161375)
chr4 (8-98)||(55173510-55173599)
chr4 (21-98)||(47096801-47096876)
chr4 (22-77)||(39161558-39161613)
chr4 (15-77)||(55173355-55173417)
chr4 (18-98)||(47097064-47097143)
chr4 (11-96)||(37996068-37996152)
chr4 (25-82)||(9738134-9738191)
chr4 (25-82)||(9738956-9739013)
chr4 (49-98)||(2623449-2623497)
chr4 (421-477)||(37335336-37335392)
[»] chr2 (16 HSPs)
chr2 (11-98)||(16973065-16973151)
chr2 (11-98)||(2916379-2916465)
chr2 (11-98)||(16973324-16973410)
chr2 (22-80)||(40987675-40987733)
chr2 (12-77)||(2916638-2916703)
chr2 (21-81)||(38982827-38982887)
chr2 (11-98)||(44594249-44594336)
chr2 (21-97)||(44594508-44594583)
chr2 (15-98)||(11533709-11533791)
chr2 (21-98)||(38982558-38982634)
chr2 (23-98)||(13559573-13559647)
chr2 (11-73)||(24126183-24126245)
chr2 (31-80)||(24125688-24125737)
chr2 (11-73)||(24125913-24125975)
chr2 (12-93)||(40987907-40987987)
chr2 (25-82)||(34826709-34826766)
[»] chr1 (11 HSPs)
chr1 (11-97)||(37189608-37189693)
chr1 (12-98)||(19056151-19056236)
chr1 (11-98)||(10824629-10824715)
chr1 (11-98)||(22683142-22683228)
chr1 (11-97)||(18844461-18844546)
chr1 (21-98)||(19056421-19056497)
chr1 (11-98)||(15825781-15825865)
chr1 (11-98)||(18844708-18844795)
chr1 (11-98)||(37189369-37189454)
chr1 (11-80)||(10824386-10824455)
chr1 (11-55)||(22683401-22683445)
[»] chr8 (12 HSPs)
chr8 (11-98)||(13884490-13884576)
chr8 (11-98)||(13884748-13884834)
chr8 (12-98)||(29714543-29714628)
chr8 (21-98)||(42126654-42126730)
chr8 (11-90)||(2554110-2554188)
chr8 (11-98)||(29714802-29714888)
chr8 (11-98)||(11867942-11868027)
chr8 (11-76)||(43416285-43416350)
chr8 (11-98)||(42126383-42126469)
chr8 (25-82)||(26745279-26745336)
chr8 (15-52)||(14996724-14996761)
chr8 (25-82)||(26746012-26746069)
[»] chr7 (15 HSPs)
chr7 (21-98)||(28715912-28715988)
chr7 (12-80)||(30862236-30862304)
chr7 (8-98)||(6474538-6474626)
chr7 (11-99)||(6474280-6474367)
chr7 (11-98)||(41985911-41985997)
chr7 (22-80)||(47373733-47373791)
chr7 (11-96)||(28715645-28715729)
chr7 (26-98)||(41986183-41986254)
chr7 (44-98)||(22226665-22226718)
chr7 (11-98)||(47373463-47373551)
chr7 (25-82)||(38408174-38408231)
chr7 (11-80)||(30862480-30862549)
chr7 (25-82)||(6270235-6270292)
chr7 (25-82)||(6271241-6271298)
chr7 (25-82)||(38407448-38407505)
[»] chr3 (10 HSPs)
chr3 (14-97)||(46003511-46003593)
chr3 (16-96)||(40364222-40364301)
chr3 (11-98)||(51663510-51663596)
chr3 (21-98)||(40244626-40244702)
chr3 (11-96)||(46003251-46003335)
chr3 (14-79)||(40364060-40364125)
chr3 (22-98)||(20538205-20538280)
chr3 (11-98)||(51663251-51663337)
chr3 (36-98)||(40244873-40244934)
chr3 (11-80)||(20537944-20538013)
[»] chr5 (2 HSPs)
chr5 (11-98)||(21249363-21249449)
chr5 (47-97)||(21249629-21249678)


Alignment Details
Target: scaffold0781 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 299 - 608
Target Start/End: Original strand, 5582 - 5889
Alignment:
Q  299 aatgtgtgcatgtatgagcatgtccttgtaataatattaaataatatatatgttgccctcaccactcaaaatttcaacgtctatatcattgatttcatga 398  Q
    |||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5582 aatgtgtgtatgtatgagcatgtgcttgtaataatatgaaataatatatatgttgccctcaccactcaaaatttcaa-gtctatatcattgatttcatga 5680  T
Q  399 ttttattttgtc-aacattttatttttcaaatagcacgaaactaacgtgcactataaccctcgtggtgaagtggatatatatataccaccataatatctc 497  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  5681 ttttactttgtcgaacattttatttttcaaatagcacgaaactaacgtgcactataaccctcgtggtgaagtggatatatata--ccaccataatatctc 5778  T
Q  498 acctccaatgatctaaccgatnnnnnnnttgttctctttaggtatcatgacatgattctcaaggtagttaatggggggtgcagatcctctccatttcttt 597  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  5779 acctccaatgatctaaccgataaaaaaattgttctctttaggtatcatgacatgattctcgaggtagttaatggggggtgcagatcctctccatttcctt 5878  T
Q  598 agaataaattg 608  Q
    |||||||||||    
T  5879 agaataaattg 5889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 5295 - 5474
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagcaaaatataaaaa 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||||| |||||||||||    
T  5295 cataggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggac-cggatgattgaataagccaaatataaaaa 5393  T
Q  111 gacaacacatagcgaaagatacttctagccacacttctcatacccaaattgtaatatactataaaattatttgtaaaagaat 192  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  5394 gacaacacatagcaaaagacacttctagccacacttctcataccaaaattgtaatatactataaaatta-ttgtaaaagaat 5474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 299 - 608
Target Start/End: Original strand, 2217126 - 2217433
Alignment:
Q  299 aatgtgtgcatgtatgagcatgtccttgtaataatattaaataatatatatgttgccctcaccactcaaaatttcaacgtctatatcattgatttcatga 398  Q
    |||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2217126 aatgtgtgtatgtatgagcatgtgcttgtaataatatgaaataatatatatgttgccctcaccactcaaaatttcaa-gtctatatcattgatttcatga 2217224  T
Q  399 ttttattttgtc-aacattttatttttcaaatagcacgaaactaacgtgcactataaccctcgtggtgaagtggatatatatataccaccataatatctc 497  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  2217225 ttttactttgtcgaacattttatttttcaaatagcacgaaactaacgtgcactataaccctcgtggtgaagtggatatatata--ccaccataatatctc 2217322  T
Q  498 acctccaatgatctaaccgatnnnnnnnttgttctctttaggtatcatgacatgattctcaaggtagttaatggggggtgcagatcctctccatttcttt 597  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  2217323 acctccaatgatctaaccgataaaaaaattgttctctttaggtatcatgacatgattctcgaggtagttaatggggggtgcagatcctctccatttcctt 2217422  T
Q  598 agaataaattg 608  Q
    |||||||||||    
T  2217423 agaataaattg 2217433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 2216838 - 2217018
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagcaaaatataaaaa 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||||| |||||||||||    
T  2216838 cataggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggac-cggatgattgaataagccaaatataaaaa 2216936  T
Q  111 gacaacacatagcgaaagatacttctagccacacttctcatacccaaattgtaatatactataaaattatttgtaaaagaat 192  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2216937 gacaacacatagcaaaagacacttctagccacacttctcataccaaaattgtaatatactataaaattatttgtaaaagaat 2217018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 24690607 - 24690691
Alignment:
Q  12 ataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataag 97  Q
    |||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| || ||||||||||||||    
T  24690607 ataggggaccaaattggtacaaattatagttagggaaccaaattaaaacaatcaattaagttaaggga-tcgggtgattgaataag 24690691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 24798882 - 24798968
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| || |||||||||||||||    
T  24798882 cataggggaccaaattgatacaaattatagttaggggatcaaattaagacaatcaattaatttaaggga-tcgggtgattgaataagc 24798968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 24690442 - 24690356
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||| | |||||||||||||||    
T  24690442 catagaggaccaaattggtacaaattatagtaaggggaccaaattgagacaatcaattaagttaagagac-cgggtgattgaataagc 24690356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 18494993 - 18495084
Alignment:
Q  12 ataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagcaaaata 104  Q
    |||||||| ||||||| ||||||||||||||| |||| |||||||| | ||||||||||||||||||||| || ||||||||||||| |||||    
T  18494993 ataggggaccaaattgatacaaattatagttaagggatcaaattaatataatcaattaagttaagggact-agatgattgaataagccaaata 18495084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 11644012 - 11644094
Alignment:
Q  16 gggatcaaattggtacaaattatagttagggg-accaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    |||| ||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||| | |||||||||||||||    
T  11644012 gggaccaaattgatacaaattatagttagggggaccaaattgagacaatcaattaagttaagggac-cgggtgattgaataagc 11644094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 11643836 - 11643754
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaat 94  Q
    ||||||| | ||||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||||| | |||||||||||    
T  11643836 catagggaaccaaattgatacaaattatagttaggggatcaaattgagacaatcaattaaattaagggac-cgggtgattgaat 11643754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 18494820 - 18494735
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||||||| |||| ||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||| || ||||||||||||||    
T  18494820 cataggggaccaaaatggtacaaattatagctaggg-accaaattgagacaatcaataaagttaagggac-catgtgattgaataagc 18494735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 24798712 - 24798643
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggac 80  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||||| | |||| |||||||||||||||||    
T  24798712 catagaggaccaaattggtacaaattatagtcaggggaccaaattgaaacaaccaattaagttaagggac 24798643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 9955643 - 9955700
Alignment:
Q  25 ttggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactc 82  Q
    ||||||||||||||| |||||||||||| || | |||| |||||||||||||||||||    
T  9955643 ttggtacaaattatatttaggggaccaatttgatacaaacaattaagttaagggactc 9955700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 9954880 - 9954820
Alignment:
Q  25 ttggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcagg 85  Q
    ||||||||||||||| |||||||||||| ||   |||| ||||||||||||||||||||||    
T  9954880 ttggtacaaattatatttaggggaccaatttggtacaaacaattaagttaagggactcagg 9954820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 22965 - 23051
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  22965 catagaggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggac-cgggtgattgaataagc 23051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 50509388 - 50509474
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  50509388 cataggggaccaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaaggga-tcagatgattgaataagc 50509474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 39161375 - 39161289
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |||||||||||||||    
T  39161375 cataggggaccaaattggtacaaattatagttaggggaccaaattaagacattcaattaagttaaagga-tcgggtgattgaataagc 39161289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 55173510 - 55173599
Alignment:
Q  8 aagcataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    |||||||||||| ||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||| | |||||||||||||||    
T  55173510 aagcataggggaccaaattggtacaaattatagttaggagatcaaattgagacaatcaattaagttaagggac-cgggtgattgaataagc 55173599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 47096876 - 47096801
Alignment:
Q  21 caaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    |||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  47096876 caaattggtacaaattat-gttaggggaccaaattgagataatcaattaagttaaggga-tcaggtgattgaataagc 47096801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 39161558 - 39161613
Alignment:
Q  22 aaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagg 77  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39161558 aaattggtacaaattatagttaggggaccaaattaaaacaatcaattaagttaagg 39161613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 55173417 - 55173355
Alignment:
Q  15 ggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagg 77  Q
    ||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  55173417 ggggaccaaattaatacaaattatagttaggggaccaaattaagacaatcaattaagttaagg 55173355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 47097064 - 47097143
Alignment:
Q  18 gatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| || || | |||||||||||||    
T  47097064 gatcaaattggtacaaattatagttagaggactaaattgagacaatcaattaagttaagaga-tcggatgattgaataagc 47097143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 37996152 - 37996068
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataa 96  Q
    ||||||||| ||||||| ||||||||||||||| ||||||||||| | ||||||| || | |||||||| ||||||||||||||||    
T  37996152 cataggggaccaaattgatacaaattatagttaagggaccaaattgaaacaatcattttaattaaggga-tcaggtgattgaataa 37996068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 9738191 - 9738134
Alignment:
Q  25 ttggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactc 82  Q
    ||||||||||||||| |||||||||||| ||   |||| |||||||||||||||||||    
T  9738191 ttggtacaaattatatttaggggaccaatttggtacaaacaattaagttaagggactc 9738134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 9738956 - 9739013
Alignment:
Q  25 ttggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactc 82  Q
    ||||||||||||||| |||||||||||| || | |||| |||| ||||||||||||||    
T  9738956 ttggtacaaattatatttaggggaccaatttgatacaaacaatcaagttaagggactc 9739013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 2623449 - 2623497
Alignment:
Q  49 ccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||||| |||||||||||||||||||||||| |  ||||||||||||||    
T  2623449 ccaaattgagacaatcaattaagttaagggac-cgagtgattgaataagc 2623497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 421 - 477
Target Start/End: Complemental strand, 37335392 - 37335336
Alignment:
Q  421 ttttcaaatagcacgaaactaacgtgcactataaccctcgtggtgaagtggatatat 477  Q
    ||||||||||||| ||||||||| || | | |||| ||| |||||||||||||||||    
T  37335392 ttttcaaatagcatgaaactaacatgtagtctaactctcatggtgaagtggatatat 37335336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 5e-30; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 16973151 - 16973065
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  16973151 cataggggaccaaattggtacaaactatagttaggggaccaaattaagacaatcaattaagttaagggac-cgggtgattgaataagc 16973065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 2916465 - 2916379
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||| || || |||||||||||||||    
T  2916465 cataggggaccaaattggtacaaattatagttaggggatcaaattgagacaatcaattaagttaagaga-tcgggtgattgaataagc 2916379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 16973324 - 16973410
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||| ||| |||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||    
T  16973324 catagaggaccaaattgacacaaattatagttaggggaccaaattgagacaatcaattaagttaagggac-catgtgattgaataagc 16973410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 40987733 - 40987675
Alignment:
Q  22 aaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggac 80  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  40987733 aaattggtacaaattatagttagggaaccaaattgagacaatcaattaagttaagggac 40987675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 2916638 - 2916703
Alignment:
Q  12 ataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagg 77  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  2916638 atagaggatcaagttggtacaaataatagttaggggaccaaattgagacaatcaattaagttaagg 2916703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 38982827 - 38982887
Alignment:
Q  21 caaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggact 81  Q
    ||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  38982827 caaattgatacaaattatagttaagggaccaaattgagacaatcaattaagttaagggact 38982887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 44594336 - 44594249
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttagggg-accaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||| ||| ||||||| ||||||||||||||||||  |||||||| |||||||||||||||||||||||| | |||||||||||||||    
T  44594336 catagaggaccaaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaagggac-cgggtgattgaataagc 44594249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 44594508 - 44594583
Alignment:
Q  21 caaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataag 97  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||| |||| |||| | ||||||||||||||    
T  44594508 caaattgatacaaattatagttaggggaccaaattgagacaatcaattaaattaaaggac-cgggtgattgaataag 44594583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 11533709 - 11533791
Alignment:
Q  15 ggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||| |||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| ||| | | |||||||||||||    
T  11533709 ggggaccaaattggtacaaattatagttgggggaccaaattgagacaatcacttaagttaagagac-ctgatgattgaataagc 11533791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 38982634 - 38982558
Alignment:
Q  21 caaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| ||| || ||||||||| |||||    
T  38982634 caaattggtacaaattatagttagggagccaaattgagacaatcaattaagttaaagga-tcgggtgattgattaagc 38982558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 13559573 - 13559647
Alignment:
Q  23 aattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||| |||||||||||||||||| |||||||| | |||||||||||||||||||||| | | |||||||||||||    
T  13559573 aattgatacaaattatagttagggaaccaaattgaaacaatcaattaagttaagggac-cggatgattgaataagc 13559647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 24126183 - 24126245
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagtt 73  Q
    |||| |||| ||||||||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  24126183 cataagggaccaaattggtacaaattatagttaggagaccaaattgagaaaatcaattaagtt 24126245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 24125737 - 24125688
Alignment:
Q  31 caaattatagttaggggaccaaattaagacaatcaattaagttaagggac 80  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  24125737 caaattatagttaggggatcaaattgagacaatcaattaagttaagggac 24125688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 24125913 - 24125975
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagtt 73  Q
    |||| |||| ||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||    
T  24125913 cataagggaccaaattggtacaaattatagttaggagaccaaattgagaaaattaattaagtt 24125975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 40987907 - 40987987
Alignment:
Q  12 ataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaa 93  Q
    |||||||| ||||||  |||||||||||||||| ||| |||||| ||||||| |||||||||||| ||| | ||||||||||    
T  40987907 ataggggaccaaattaatacaaattatagttagaggatcaaattgagacaattaattaagttaagagac-cgggtgattgaa 40987987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 34826709 - 34826766
Alignment:
Q  25 ttggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactc 82  Q
    ||||||||||||| | ||| |||||||| || | |||| |||||||||||||||||||    
T  34826709 ttggtacaaattaaatttacgggaccaatttgatacaaacaattaagttaagggactc 34826766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 37189608 - 37189693
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataag 97  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  37189608 cataggggaccaaattggtacaaattatagataggggaccaaattgagacaatcaattaagttaagggac-caggtgattgaataag 37189693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 19056236 - 19056151
Alignment:
Q  12 ataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    |||||||| ||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  19056236 ataggggaccaaattgatacaaattataattaggggaccaaattaatacaatcaattaagttaaggga-tcaggtgattgaataagc 19056151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 10824629 - 10824715
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| | | |||||||||||||    
T  10824629 cataggggaccaaattgatacaaattatagttaggggaccaaattgagacaatcaattaagttaagggac-cggatgattgaataagc 10824715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 22683228 - 22683142
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||  | |||||||||||||||    
T  22683228 cataggggaccaaattgatacaaattatagttaggggaccaaattgagacaatcaattaagttaaagga-gcgggtgattgaataagc 22683142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 18844546 - 18844461
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataag 97  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||| || ||| |||||||||    
T  18844546 cataggggaccaaattgatacaaattatagttaggggaccaaattgagataatcaattaagttaagggac-catgtggttgaataag 18844461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 19056421 - 19056497
Alignment:
Q  21 caaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| | | |||||||||||||    
T  19056421 caaattggtacagattatagttaggggaccaaattaaaacaatcaattaagttaagggac-cggatgattgaataagc 19056497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 15825781 - 15825865
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||||||| |||||||||||||||||||||||  |||||||||| |||||||||||||||||||| ||| | |||||||||||||||    
T  15825781 cataggggaccaaattggtacaaattatagtta--ggaccaaattgagacaatcaattaagttaagagac-cgggtgattgaataagc 15825865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 18844708 - 18844795
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttagggg-accaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||| ||| ||||||| ||||||||||||||||||  |||||||| ||||||||||||||||||||||| || |||||||||||||||    
T  18844708 catagaggaccaaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaaggga-tcgggtgattgaataagc 18844795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 37189454 - 37189369
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||| ||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||| |||| | |||||||||||||||    
T  37189454 catagaggaccaaattggtacaaattatagttatgagaccaaattgagacaatcaattaagttaa-ggac-cgggtgattgaataagc 37189369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 10824455 - 10824386
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggac 80  Q
    ||||| ||| ||||||| ||||||||||| |||||||||||||||   | ||||||||||||||| ||||    
T  10824455 catagaggaccaaattgatacaaattataattaggggaccaaattgcaataatcaattaagttaaaggac 10824386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 22683401 - 22683445
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaatt 55  Q
    ||||| ||| ||||||||||||||| | |||||||||||||||||    
T  22683401 catagaggaccaaattggtacaaataaaagttaggggaccaaatt 22683445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 13884576 - 13884490
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||    
T  13884576 catagggggccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggac-cgggtgattgaataagc 13884490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 13884748 - 13884834
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||| ||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| | |||||||||||||||    
T  13884748 catagaggaccaaattggtacaaattatagttaggggactaaattgagacaatcaattaagttaagggac-cgggtgattgaataagc 13884834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 29714628 - 29714543
Alignment:
Q  12 ataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    |||||||| |||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||| | |||||||||||||||    
T  29714628 ataggggaccaaattggtacaaactatagtttggggaccaaattgagacaatcaattaagttaagggac-cgggtgattgaataagc 29714543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 42126654 - 42126730
Alignment:
Q  21 caaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    |||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| | |||||||||||||||    
T  42126654 caaattggtacaaattatagttaggggatcaaattgagataatcaattaagttaagggac-cgggtgattgaataagc 42126730  T

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Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 2554110 - 2554188
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgatt 90  Q
    |||||| || |||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||    
T  2554110 cataggagaccaaattggaacaaattatagttaggggatcaaattgagacaatcaattaagttaagggact-aggtgatt 2554188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 29714802 - 29714888
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||| ||| ||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||  |||||||    
T  29714802 catagaggaccaaattgatacaaattatagttaagggaccaaattaaaacaatcaattaagttaagggac-caggtgatcaaataagc 29714888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 11867942 - 11868027
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||| ||| ||||||| ||||||||||||||| || |||||||| ||||||||||||||||||| |||| |||||||||||||||||    
T  11867942 catagaggaccaaattgatacaaattatagttaaggaaccaaattgagacaatcaattaagttaa-ggac-caggtgattgaataagc 11868027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 43416350 - 43416285
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaag 76  Q
    |||||| ||| |||||| ||||||||||||||||||||  ||||||||||||||||||||||||||    
T  43416350 cataggagattaaattgatacaaattatagttaggggattaaattaagacaatcaattaagttaag 43416285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 42126469 - 42126383
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||||||  ||||||| |||||||||||||||| | | |||||| ||||||| |||||||||||||||| | |||||||||||||||    
T  42126469 catagggggccaaattgatacaaattatagttagagaatcaaattgagacaattaattaagttaagggac-cgggtgattgaataagc 42126383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 26745336 - 26745279
Alignment:
Q  25 ttggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactc 82  Q
    ||||||||||||||| |||||||||||| |||  |||| |||||||||||||||||||    
T  26745336 ttggtacaaattatatttaggggaccaatttagtacaaacaattaagttaagggactc 26745279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 14996724 - 14996761
Alignment:
Q  15 ggggatcaaattggtacaaattatagttaggggaccaa 52  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  14996724 ggggatcaaattggtacaaattataattaggggaccaa 14996761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 26746012 - 26746069
Alignment:
Q  25 ttggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactc 82  Q
    ||||||||||||||| |||||||||||| || | |||| ||| |||||||||||||||    
T  26746012 ttggtacaaattatatttaggggaccaatttgatacaaacaaataagttaagggactc 26746069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 28715912 - 28715988
Alignment:
Q  21 caaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||    
T  28715912 caaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggac-cgggtaattgaataagc 28715988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 30862304 - 30862236
Alignment:
Q  12 ataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggac 80  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30862304 ataggggaccaaattggtacaaattatagttaggggaccaaattcagacaatcaattaagttaagggac 30862236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 6474538 - 6474626
Alignment:
Q  8 aagcataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||||| |||| ||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  6474538 aagcataagggagcaaatcggtacaa-ttatagttaggagaccaaattaagacaatcaattaagttaaggga-tcgggtgattgaataagc 6474626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 6474367 - 6474280
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagca 99  Q
    ||||||||| ||||||| || ||||||||||||||||| |||||| ||||||||||||||||||||||| || ||| ||||||||||||    
T  6474367 cataggggaccaaattgatataaattatagttaggggatcaaattgagacaatcaattaagttaaggga-tccggtaattgaataagca 6474280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 41985997 - 41985911
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    |||| |||| |||||||  ||||||||||||||||||| |||||| |||||||||||||||||||||||||  |||||||||||||||    
T  41985997 catatgggaccaaattgaaacaaattatagttaggggatcaaattgagacaatcaattaagttaagggact-gggtgattgaataagc 41985911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 47373733 - 47373791
Alignment:
Q  22 aaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggac 80  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  47373733 aaattggtacaaattataattaggggaccaaattgagacaatcaattaagttaagggac 47373791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 28715729 - 28715645
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataa 96  Q
    ||||||||| ||||||| |||||||||||||||||  |||||||||| ||||| |||||||||||||||| | |||||||||||||    
T  28715729 cataggggaccaaattgatacaaattatagttaggaaaccaaattaaaacaattaattaagttaagggac-cgggtgattgaataa 28715645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 41986183 - 41986254
Alignment:
Q  26 tggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||||||||||||||||||||| |||||| |||||| |||||||||||||| || | |||||||||||||||    
T  41986183 tggtacaaattatagttaggggatcaaattgagacaaacaattaagttaaggaac-cgggtgattgaataagc 41986254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 22226665 - 22226718
Alignment:
Q  44 ggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||    
T  22226665 ggggaccaaattgagacaatcaattaagctaaggga-tcaggtgattgaataagc 22226718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 47373551 - 47373463
Alignment:
Q  11 cataggggatcaaattggtacaaattatag--ttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||||||| |||||||||||||||||||   |||| ||| |||||| |||||||||||||||||||| || ||  ||||||||||||||    
T  47373551 cataggggaccaaattggtacaaattatataattagaggatcaaattgagacaatcaattaagttaagaga-tcgagtgattgaataagc 47373463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 38408174 - 38408231
Alignment:
Q  25 ttggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactc 82  Q
    ||||||||||||||| |||||||||||| || | |||| |||||||||||||||||||    
T  38408174 ttggtacaaattatatttaggggaccaatttgatacaaacaattaagttaagggactc 38408231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 30862480 - 30862549
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggac 80  Q
    |||| |||| ||||||| |||||||||||||||||| || ||||| | |||||||||| | |||||||||    
T  30862480 cataagggaccaaattgatacaaattatagttagggaacaaaattgaaacaatcaattcaattaagggac 30862549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 6270292 - 6270235
Alignment:
Q  25 ttggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactc 82  Q
    ||||||||||||||| ||||| |||||| |||  ||||  ||||||||||||||||||    
T  6270292 ttggtacaaattatatttaggcgaccaatttagtacaaataattaagttaagggactc 6270235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 6271241 - 6271298
Alignment:
Q  25 ttggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactc 82  Q
    ||||||||||||||| |||||||||||| ||   | || |||||||||||||||||||    
T  6271241 ttggtacaaattatatttaggggaccaatttggtagaaacaattaagttaagggactc 6271298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 38407505 - 38407448
Alignment:
Q  25 ttggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactc 82  Q
    ||||||||||||||| |||||||||||| ||   |||| | |||||||||||||||||    
T  38407505 ttggtacaaattatatttaggggaccaatttggtacaaaccattaagttaagggactc 38407448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 46003511 - 46003593
Alignment:
Q  14 aggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataag 97  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||| ||||| ||||||    
T  46003511 aggggatcaaattggtacaaattttagttaggggaccaaattgagacaatcaattaagttaagggac-cagatgattaaataag 46003593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 40364222 - 40364301
Alignment:
Q  16 gggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataa 96  Q
    |||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||| || ||||||||||||    
T  40364222 gggatcaaattggtacaaattatagttaggagaccaaattgaaacaatcaattaagttaagggac-caagtgattgaataa 40364301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 51663510 - 51663596
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| | | |||||||||||||    
T  51663510 catagaggaccaaattgctacaaattatagttaggggaccaaattgagacaatcaattaagttaagggac-cggatgattgaataagc 51663596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 40244702 - 40244626
Alignment:
Q  21 caaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || | |||||||||||||    
T  40244702 caaattggtacaaattatagttaagggaccaaattgagacaatcaattaagttaaggga-tcggatgattgaataagc 40244626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 46003335 - 46003251
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataa 96  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| | |||||||||||||    
T  46003335 catagaggaccaaattgatacaaattatagttaggggaccaaattaaaacaatcaattaagttaaaggac-cgggtgattgaataa 46003251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 40364125 - 40364060
Alignment:
Q  14 aggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaaggga 79  Q
    |||||||||||||| ||||||||||| ||| ||||||||||||||| |||||||||||||||||||    
T  40364125 aggggatcaaattgatacaaattataattatgggaccaaattaagataatcaattaagttaaggga 40364060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 20538205 - 20538280
Alignment:
Q  22 aaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    |||||| |||||||||||||||||||| |||||| |||||||||||||| |||| |||| | |||||||||||||||    
T  20538205 aaattgatacaaattatagttaggggatcaaattgagacaatcaattaaattaaaggac-cgggtgattgaataagc 20538280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 51663337 - 51663251
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    |||||||||  |||||| |||||||||||||||| |||||| ||||| |||||||||||||||||| ||| | ||||||| |||||||    
T  51663337 cataggggactaaattgatacaaattatagttagtggaccatattaaaacaatcaattaagttaagagac-cgggtgattaaataagc 51663251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 40244873 - 40244934
Alignment:
Q  36 tatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    |||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||    
T  40244873 tatagttaggggaccaaattgagacaatcaattaagttaagggac-ggggtgattgaataagc 40244934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 20538013 - 20537944
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggac 80  Q
    ||||||||| |||||||| ||||||||||||||||||| |||||| | |  |||||||||||||||||||    
T  20538013 cataggggaccaaattggaacaaattatagttaggggatcaaattgataatatcaattaagttaagggac 20537944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 21249449 - 21249363
Alignment:
Q  11 cataggggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggactcaggtgattgaataagc 98  Q
    |||||||||  |||||||||||| ||||| ||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||    
T  21249449 cataggggactaaattggtacaatttataattaggggaccaaattgagacaatcaattacggtaagggac-caggtgattgaataagc 21249363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 21249629 - 21249678
Alignment:
Q  47 gaccaaattaagacaatcaattaagttaagggactcaggtgattgaataag 97  Q
    ||||||||||||||||||||||||||||||||||  || ||||||||||||    
T  21249629 gaccaaattaagacaatcaattaagttaagggac-aagatgattgaataag 21249678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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