View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3828_low_10 (Length: 405)
Name: NF3828_low_10
Description: NF3828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3828_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 397
Target Start/End: Original strand, 38322077 - 38322443
Alignment:
| Q |
20 |
ttcaaaactttccataaatcagggactgtccaaatgatataaaagaagcaatttctagtcttatatttgcatctgcaaggtgtggggatattcccgagct |
119 |
Q |
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| T |
38322077 |
ttcaaaactttccataaatcagggactgtccaaatgatataaaagaagcaatttctagtcttatatttgcatctgcaagatgtggggatattcccgagct |
38322176 |
T |
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| Q |
120 |
ctttgtaatcaggatactgtttggaaaacgttatggtgagcaatttgcaactacagctgtggagctatttccggggaatctcgttaacaaacaggtacat |
219 |
Q |
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| T |
38322177 |
ctttgtaatcaggatactgtttggaaaacgttatggtgagcaatttgcaactacagctgtggagctatttccggggaatctcgttaacaaacaggtacat |
38322276 |
T |
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| Q |
220 |
ttttattcgtttcagtgaagggctatgtagtaccaacagttttgatccaaaacgtgccctatatttgacatatgtcagtgtctgacaccgacacaatcct |
319 |
Q |
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| T |
38322277 |
ttttgttcgtttcagtgaagggctatgtagcaccgacagttttgatccaaaacgtgccctatatttgacatatgtcagtgtctgacacc----------- |
38322365 |
T |
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| Q |
320 |
gacttatgcggttatatttaatcacttttactttcttaaactattacaaatgttaatgtccgtgtttgcgtctgtgct |
397 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38322366 |
gacttatgtggttatatttaatcacttttactttcttaaactattacaaatgttaatgtccgtgtttgcgtctgtgct |
38322443 |
T |
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