View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3828_low_13 (Length: 357)

Name: NF3828_low_13
Description: NF3828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3828_low_13
NF3828_low_13
[»] chr4 (19 HSPs)
chr4 (1-348)||(39506868-39507220)
chr4 (247-301)||(3144652-3144706)
chr4 (247-301)||(20743278-20743332)
chr4 (227-297)||(49659502-49659573)
chr4 (187-301)||(24343512-24343632)
chr4 (255-348)||(34515882-34515975)
chr4 (187-253)||(53381530-53381596)
chr4 (260-300)||(7424676-7424716)
chr4 (255-299)||(31243556-31243600)
chr4 (187-238)||(19482747-19482798)
chr4 (186-253)||(23292925-23292991)
chr4 (200-258)||(3947714-3947771)
chr4 (231-301)||(16402195-16402265)
chr4 (247-301)||(32910556-32910610)
chr4 (187-253)||(34306744-34306809)
chr4 (185-230)||(25950470-25950515)
chr4 (254-299)||(50848310-50848355)
chr4 (249-300)||(30520438-30520490)
chr4 (247-299)||(53968553-53968605)
[»] chr8 (14 HSPs)
chr8 (187-299)||(39820436-39820547)
chr8 (207-312)||(1676706-1676811)
chr8 (244-301)||(35431137-35431194)
chr8 (199-298)||(31580079-31580178)
chr8 (250-300)||(9936820-9936870)
chr8 (249-299)||(13845241-13845291)
chr8 (187-301)||(30067968-30068082)
chr8 (200-298)||(12559053-12559157)
chr8 (259-296)||(26507450-26507487)
chr8 (200-259)||(44067574-44067633)
chr8 (247-301)||(13009493-13009547)
chr8 (187-237)||(29510233-29510283)
chr8 (255-299)||(28883886-28883930)
chr8 (247-299)||(40063958-40064010)
[»] chr5 (17 HSPs)
chr5 (183-307)||(7997102-7997226)
chr5 (247-299)||(43554528-43554580)
chr5 (247-297)||(39695999-39696049)
chr5 (187-300)||(32630675-32630788)
chr5 (254-299)||(19293430-19293475)
chr5 (249-317)||(25863193-25863261)
chr5 (254-297)||(29365015-29365058)
chr5 (187-237)||(2436980-2437030)
chr5 (200-297)||(26312778-26312875)
chr5 (213-300)||(2577145-2577233)
chr5 (253-298)||(15410454-15410499)
chr5 (264-301)||(18162060-18162097)
chr5 (249-298)||(31264446-31264495)
chr5 (249-301)||(18607099-18607151)
chr5 (256-300)||(21577117-21577161)
chr5 (187-235)||(38464313-38464361)
chr5 (257-301)||(42469226-42469270)
[»] chr3 (22 HSPs)
chr3 (191-307)||(25651969-25652091)
chr3 (201-285)||(12100290-12100374)
chr3 (226-301)||(15864838-15864913)
chr3 (200-301)||(24204994-24205095)
chr3 (187-300)||(25074795-25074914)
chr3 (249-299)||(25892467-25892517)
chr3 (187-299)||(3730108-3730217)
chr3 (187-298)||(55401083-55401194)
chr3 (255-298)||(1830351-1830394)
chr3 (247-309)||(27903629-27903691)
chr3 (204-301)||(25365467-25365564)
chr3 (247-307)||(12704657-12704717)
chr3 (187-238)||(40052380-40052431)
chr3 (187-250)||(52369843-52369906)
chr3 (247-301)||(52369780-52369834)
chr3 (202-298)||(10954960-10955056)
chr3 (247-300)||(14223853-14223906)
chr3 (255-300)||(20691325-20691370)
chr3 (204-300)||(21149073-21149169)
chr3 (255-300)||(40150579-40150624)
chr3 (187-298)||(40993275-40993387)
chr3 (187-286)||(7171521-7171620)
[»] chr7 (16 HSPs)
chr7 (200-300)||(12278841-12278941)
chr7 (226-301)||(23751905-23751980)
chr7 (247-299)||(29812664-29812716)
chr7 (247-301)||(23930224-23930278)
chr7 (185-296)||(7133210-7133327)
chr7 (186-251)||(17852056-17852120)
chr7 (251-300)||(32855360-32855409)
chr7 (187-259)||(5409771-5409842)
chr7 (187-298)||(15680817-15680928)
chr7 (250-301)||(4017797-4017848)
chr7 (250-301)||(22683758-22683809)
chr7 (185-259)||(32093952-32094026)
chr7 (188-235)||(32308202-32308249)
chr7 (247-301)||(17780084-17780138)
chr7 (200-253)||(32287416-32287468)
chr7 (187-298)||(598216-598327)
[»] chr1 (18 HSPs)
chr1 (187-311)||(22794018-22794142)
chr1 (247-301)||(42004947-42005001)
chr1 (249-308)||(6936402-6936461)
chr1 (248-301)||(6573994-6574047)
chr1 (202-300)||(19637774-19637872)
chr1 (184-298)||(46348320-46348434)
chr1 (235-300)||(29415754-29415819)
chr1 (200-259)||(1486657-1486715)
chr1 (187-238)||(15323236-15323287)
chr1 (243-300)||(7988446-7988504)
chr1 (187-276)||(9690213-9690303)
chr1 (200-238)||(18190061-18190099)
chr1 (185-298)||(22515825-22515938)
chr1 (199-240)||(23219615-23219656)
chr1 (255-298)||(12040690-12040734)
chr1 (264-296)||(28676183-28676215)
chr1 (255-299)||(39101190-39101234)
chr1 (250-301)||(48415728-48415780)
[»] chr6 (20 HSPs)
chr6 (247-301)||(6389748-6389802)
chr6 (247-300)||(19602181-19602234)
chr6 (247-301)||(34446570-34446624)
chr6 (247-300)||(17168463-17168516)
chr6 (213-301)||(12235485-12235573)
chr6 (187-238)||(8776908-8776959)
chr6 (255-297)||(2153895-2153937)
chr6 (246-311)||(12086344-12086409)
chr6 (187-298)||(34595142-34595253)
chr6 (186-253)||(28152152-28152218)
chr6 (255-298)||(30781302-30781345)
chr6 (255-301)||(6299517-6299563)
chr6 (255-301)||(6306327-6306373)
chr6 (187-296)||(13364645-13364754)
chr6 (247-301)||(26247431-26247485)
chr6 (258-311)||(7625117-7625170)
chr6 (253-293)||(4420185-4420225)
chr6 (200-236)||(8389421-8389457)
chr6 (200-236)||(31959220-31959256)
chr6 (255-299)||(34895042-34895086)
[»] chr2 (19 HSPs)
chr2 (243-301)||(12748689-12748747)
chr2 (247-300)||(23354652-23354705)
chr2 (247-299)||(25544488-25544540)
chr2 (200-300)||(24011042-24011148)
chr2 (185-298)||(18840951-18841064)
chr2 (187-300)||(34006930-34007044)
chr2 (255-300)||(23355003-23355048)
chr2 (261-311)||(8817470-8817520)
chr2 (250-300)||(10535762-10535812)
chr2 (261-299)||(22085011-22085049)
chr2 (187-253)||(27084323-27084388)
chr2 (247-301)||(30563414-30563468)
chr2 (187-253)||(37419808-37419873)
chr2 (250-300)||(38919212-38919262)
chr2 (247-296)||(11308004-11308053)
chr2 (247-300)||(19573984-19574037)
chr2 (255-299)||(4229416-4229460)
chr2 (187-235)||(19980746-19980794)
chr2 (260-300)||(31026701-31026741)
[»] scaffold0199 (1 HSPs)
scaffold0199 (207-312)||(1943-2048)
[»] scaffold0598 (1 HSPs)
scaffold0598 (247-301)||(8053-8107)
[»] scaffold0778 (1 HSPs)
scaffold0778 (259-300)||(4412-4453)
[»] scaffold0652 (1 HSPs)
scaffold0652 (200-237)||(415-452)
[»] scaffold0053 (1 HSPs)
scaffold0053 (202-298)||(8806-8902)
[»] scaffold0049 (1 HSPs)
scaffold0049 (255-296)||(56932-56973)
[»] scaffold0361 (1 HSPs)
scaffold0361 (187-298)||(14538-14646)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 39506868 - 39507220
Alignment:
Q  1 tgtttatgaacatgtggtgatgtgattnnnnnnnnnnnnncactcaaattaatgattctaagtcatggaataaaaaacgaatgtgnnnnnnnacatgtgt 100  Q
    |||||||||||||||||||||||||||             |||||||||| ||||||||||||||||||||||||||||||||||       ||||||||    
T  39506868 tgtttatgaacatgtggtgatgtgattaaaaatgaaaaaacactcaaatttatgattctaagtcatggaataaaaaacgaatgtgtttttttacatgtgt 39506967  T
Q  101 gacaaattata-------gtaacaaggtgattcaagaggtctcttgttgtccaannnnnnnatgaatcttagtgtcttaattatatcaaaaaactatgaa 193  Q
    |||||||||||       ||||||||||||||||||||||||  ||||||||||       |||||||||||||||||||||| ||||||||||||||||    
T  39506968 gacaaattatataaaccagtaacaaggtgattcaagaggtct--tgttgtccaatttttttatgaatcttagtgtcttaattaaatcaaaaaactatgaa 39507065  T
Q  194 gcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaat 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  39507066 gcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacataacacctatgattacacttaattatatcattttcataaat 39507165  T
Q  294 tattatccttgttgacgtatcgatattcaggtcgtgtctaatgtttgtgtctgtg 348  Q
    |||||||||| ||||||||||| |||||| |||||||||||||||||||| ||||    
T  39507166 tattatccttattgacgtatcggtattcaagtcgtgtctaatgtttgtgtatgtg 39507220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 3144652 - 3144706
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  3144652 ccgacacgacacctatgattacactaaattatatcattttctgaaattattatcc 3144706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 20743278 - 20743332
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  20743278 ccgacacaacacctatgattacactgaattatgtcattttctcaaattattatcc 20743332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 49659502 - 49659573
Alignment:
Q  227 tgtcggacacgtatcagtgtccgacac-aacacctatgattacacttaattatatcattttcttaaattatt 297  Q
    |||||| ||||| || ||||||||||| || ||||||||||||||| |||||||||||||||| ||||||||    
T  49659502 tgtcgggcacgtgtcggtgtccgacaccaaaacctatgattacactaaattatatcattttctcaaattatt 49659573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 301
Target Start/End: Complemental strand, 24343632 - 24343512
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtc------cgacacaacacctatgattacacttaattatat 280  Q
    ||||||||||   ||||||||| ||||||| ||||| ||||||||||||||  || |||||      |||||| |||||||| |||||||| |||||| |    
T  24343632 ctatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacgcgtcggtgtcggacaccgacacgacacctataattacactgaattatgt 24343533  T
Q  281 cattttcttaaattattatcc 301  Q
     ||||||| ||||||||||||    
T  24343532 aattttctcaaattattatcc 24343512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 348
Target Start/End: Original strand, 34515882 - 34515975
Alignment:
Q  255 acacctatgattacacttaattatatcattttcttaaattattatccttgttgacgtatcgatattcaggtcgtgtctaatgtttgtgtctgtg 348  Q
    ||||||||| ||||||| |||||| |||||||||| ||||||||||| ||| ||||| ||  | |||  || |||||| |||||||||||||||    
T  34515882 acacctatgtttacactgaattatgtcattttcttgaattattatccgtgtcgacgtgtcagtgttcgtgttgtgtctgatgtttgtgtctgtg 34515975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 53381530 - 53381596
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 253  Q
    ||||||||||   |||||||||||| |||||||||| |||||||||| |||  ||||||||||||||    
T  53381530 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggatacgcgtcagtgtccgacac 53381596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 300
Target Start/End: Complemental strand, 7424716 - 7424676
Alignment:
Q  260 tatgattacacttaattatatcattttcttaaattattatc 300  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  7424716 tatgattacactcaattatattattttcttaaattattatc 7424676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 299
Target Start/End: Original strand, 31243556 - 31243600
Alignment:
Q  255 acacctatgattacacttaattatatcattttcttaaattattat 299  Q
    ||||||||||||||||| |||||| ||||||||| ||||||||||    
T  31243556 acacctatgattacactgaattatgtcattttctcaaattattat 31243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 19482798 - 19482747
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgt 238  Q
    ||||||||||  ||||||||||||| |||||||||| | |||||||||||||    
T  19482798 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgt 19482747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 23292925 - 23292991
Alignment:
Q  186 actatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 253  Q
    |||||||||||   |||||||||||| |||| ||||| ||||||||||||||| || |||||||||||    
T  23292925 actatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacac 23292991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 3947714 - 3947771
Alignment:
Q  200 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacac 258  Q
    |||||||||||| ||||||||||  |||||||||||||| || ||||||||||| ||||    
T  3947714 acactcctcggattaggtgtgtcctggtgtcggacacgtgtc-gtgtccgacacgacac 3947771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 301
Target Start/End: Original strand, 16402195 - 16402265
Alignment:
Q  231 ggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    |||||||| |||||||||||||| ||| |||| ||||||||  || || | ||||||| ||||||||||||    
T  16402195 ggacacgtgtcagtgtccgacacgacagctataattacactgtatcatgttattttctcaaattattatcc 16402265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 32910610 - 32910556
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    |||||| |||||| || |||||||| |||||| ||||||||| ||||||||||||    
T  32910610 ccgacataacacccataattacactgaattatgtcattttctcaaattattatcc 32910556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 34306744 - 34306809
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 253  Q
    ||||||||||  |||| ||||| || |||| ||||||||||||||||||||| || |||||||||||    
T  34306744 ctatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacac 34306809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 25950470 - 25950515
Alignment:
Q  185 aactatgaagcagtaacactcctcggaataggtgtgtctcggtgtc 230  Q
    ||||||||||||   |||||||||||| ||||||||||||||||||    
T  25950470 aactatgaagcatggacactcctcggattaggtgtgtctcggtgtc 25950515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 50848310 - 50848355
Alignment:
Q  254 aacacctatgattacacttaattatatcattttcttaaattattat 299  Q
    |||||||| ||||||||| |||||||||||||| | ||||||||||    
T  50848310 aacacctacgattacactgaattatatcattttttcaaattattat 50848355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 300
Target Start/End: Original strand, 30520438 - 30520490
Alignment:
Q  249 gacacaacacctatgattacacttaattatatcattttctt-aaattattatc 300  Q
    ||||| ||||||||||||||||| |||||| ||||||| || |||||||||||    
T  30520438 gacactacacctatgattacactgaattatgtcatttttttcaaattattatc 30520490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 53968605 - 53968553
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattat 299  Q
    ||||||| ||| |||||||  |||| |||||| ||||||||||||||||||||    
T  53968605 ccgacacgacatctatgatatcactgaattatgtcattttcttaaattattat 53968553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 39820547 - 39820436
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcatttt 286  Q
    ||||||||||   ||||| |||||| |||| ||||| || |||||||||||  || ||||||||||| ||||||||||||||||| ||||||||||||||    
T  39820547 ctatgaagcacggacacttctcggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccgacacgacacctatgattacactaaattatatcatttt 39820449  T
Q  287 cttaaattattat 299  Q
    || ||||||||||    
T  39820448 ctcaaattattat 39820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 207 - 312
Target Start/End: Complemental strand, 1676811 - 1676706
Alignment:
Q  207 tcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatccttgtt 306  Q
    ||||| |||||||||   |||||| |||| || || ||||||||||| ||||||||||||||||| || ||| ||||||||  |||||||||||| |||     
T  1676811 tcggattaggtgtgtgcaggtgtcagacatgtgtcggtgtccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtc 1676712  T
Q  307 gacgta 312  Q
    ||||||    
T  1676711 gacgta 1676706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 35431137 - 35431194
Alignment:
Q  244 tgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    |||||||||| ||||||||||||||||| || ||| ||||||||| ||||||||||||    
T  35431137 tgtccgacacgacacctatgattacactaaaatatgtcattttctcaaattattatcc 35431194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 298
Target Start/End: Original strand, 31580079 - 31580178
Alignment:
Q  199 aacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattttcttaaattatt 297  Q
    ||||| ||||||| ||||||||| ||||||||| ||| || || | |||||||| | |||||||| |||||||| |||||| | ||||||||||||||||    
T  31580079 aacacccctcggattaggtgtgtttcggtgtcgaacatgtgtc-gcgtccgacatcgacacctataattacactcaattatgtgattttcttaaattatt 31580177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 300
Target Start/End: Complemental strand, 9936870 - 9936820
Alignment:
Q  250 acacaacacctatgattacacttaattatatcattttcttaaattattatc 300  Q
    ||||||||| |||||||| | | ||||||||||||||||||||||||||||    
T  9936870 acacaacacatatgattatattgaattatatcattttcttaaattattatc 9936820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 13845291 - 13845241
Alignment:
Q  249 gacacaacacctatgattacacttaattatatcattttcttaaattattat 299  Q
    ||||| |||||||||||||| || |||||||||||||||| ||||||||||    
T  13845291 gacacgacacctatgattactctaaattatatcattttctcaaattattat 13845241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 301
Target Start/End: Original strand, 30067968 - 30068082
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcatttt 286  Q
    ||||||||||   |||||| ||||| |||||||||| | |||||||||||   || || |||||| |  |||||| ||||| ||| |||||| |||||||    
T  30067968 ctatgaagcacggacactcatcggattaggtgtgtcccagtgtcggacacacgtcggtatccgactcggcacctacgattatactgaattatgtcatttt 30068067  T
Q  287 cttaaattattatcc 301  Q
    || ||||||||||||    
T  30068068 ctcaaattattatcc 30068082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 298
Target Start/End: Original strand, 12559053 - 12559157
Alignment:
Q  200 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacc------tatgattacacttaattatatcattttcttaaat 293  Q
    |||||||| ||| ||| |||||| || |||||||||||| || |||||||| |  |||||      |||||||||||| |||||||||||||||| ||||    
T  12559053 acactcctgggattagatgtgtcccgttgtcggacacgtgtcggtgtccgagatgacaccaatacatatgattacactgaattatatcattttctcaaat 12559152  T
Q  294 tatta 298  Q
    |||||    
T  12559153 tatta 12559157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 26507487 - 26507450
Alignment:
Q  259 ctatgattacacttaattatatcattttcttaaattat 296  Q
    |||||||||||||||||||||| |||||||||||||||    
T  26507487 ctatgattacacttaattatattattttcttaaattat 26507450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 44067633 - 44067574
Alignment:
Q  200 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacc 259  Q
    |||||||||| | |||| |||||  ||||||||||||| ||||||||||||||| |||||    
T  44067633 acactcctcgaattaggcgtgtcctggtgtcggacacgcatcagtgtccgacacgacacc 44067574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 13009493 - 13009547
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    ||||||| |||| |||||||||||| ||||||||  |||||| ||||||||||||    
T  13009493 ccgacacgacacttatgattacactaaattatattgttttctcaaattattatcc 13009547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 29510233 - 29510283
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacg 237  Q
    ||||||||||   |||||||||||| |||||||||| ||||||||||||||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacg 29510283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 299
Target Start/End: Original strand, 28883886 - 28883930
Alignment:
Q  255 acacctatgattacacttaattatatcattttcttaaattattat 299  Q
    |||||||||||| |||| |||||| ||||||||| ||||||||||    
T  28883886 acacctatgattccactgaattatgtcattttctcaaattattat 28883930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 40064010 - 40063958
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattat 299  Q
    ||||||| || |||||||||||| | |||||| ||||||||| ||||||||||    
T  40064010 ccgacacgacgcctatgattacaatgaattatgtcattttctcaaattattat 40063958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 307
Target Start/End: Original strand, 7997102 - 7997226
Alignment:
Q  183 aaaactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatca 282  Q
    ||||| ||||||||  |||||| |||| | ||||||||||  | |||||||||||  |||||||||||||| |||| ||| ||||||||  |||||||||    
T  7997102 aaaacaatgaagcacaaacacttctcgaattaggtgtgtcctgatgtcggacacgcgtcagtgtccgacacgacacttataattacactgtattatatca 7997201  T
Q  283 ttttcttaaattattatccttgttg 307  Q
    |||||| |||||||||||| |||||    
T  7997202 ttttctcaaattattatccgtgttg 7997226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 43554580 - 43554528
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattat 299  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||    
T  43554580 ccgacacgacacctatgattacactaaattatatcattttctcaaattattat 43554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 39695999 - 39696049
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattatt 297  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  39695999 ccgacacgacacctatgattacactaaattatatcattttctcaaattatt 39696049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 300
Target Start/End: Original strand, 32630675 - 32630788
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac-aacacctatgattacacttaattatatcattt 285  Q
    ||||||||||   |||||||||| | ||||||||||||  |||||||||||| || || ||||||||  |||| ||| |||||| | |||||||| ||||    
T  32630675 ctatgaagcatagacactcctcgaattaggtgtgtctcaatgtcggacacgtgtc-gtatccgacactgacacatataattacattgaattatataattt 32630773  T
Q  286 tcttaaattattatc 300  Q
    ||| |||||||||||    
T  32630774 tctcaaattattatc 32630788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 19293430 - 19293475
Alignment:
Q  254 aacacctatgattacacttaattatatcattttcttaaattattat 299  Q
    ||||| ||||||||||||||||||| | ||||||||||||||||||    
T  19293430 aacacatatgattacacttaattatgttattttcttaaattattat 19293475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 317
Target Start/End: Complemental strand, 25863261 - 25863193
Alignment:
Q  249 gacacaacacctatgattacacttaattatatcattttcttaaattattatccttgttgacgtatcgat 317  Q
    ||||| |||| ||| |||||||| |||||||||||||||| |||||||||| | ||| ||||| |||||    
T  25863261 gacacgacacttataattacactgaattatatcattttctcaaattattatacatgtcgacgtgtcgat 25863193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 29365058 - 29365015
Alignment:
Q  254 aacacctatgattacacttaattatatcattttcttaaattatt 297  Q
    ||||||| |||||||| ||||||||| |||||||||||||||||    
T  29365058 aacacctgtgattacatttaattataccattttcttaaattatt 29365015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 2437030 - 2436980
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacg 237  Q
    ||||||||||  ||||||||||||| |||| |||||| |||||||||||||    
T  2437030 ctatgaagcacgaacactcctcggattaggcgtgtcttggtgtcggacacg 2436980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 297
Target Start/End: Complemental strand, 26312875 - 26312778
Alignment:
Q  200 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattttcttaaattatt 297  Q
    |||||||||||| ||||||||||  |||||| |||||||||| |||||||||| | | || ||| |||||||| |||||  | ||||||| ||||||||    
T  26312875 acactcctcggattaggtgtgtcctggtgtcagacacgtatc-gtgtccgacaccgatacatataattacactgaattaattgattttctcaaattatt 26312778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 300
Target Start/End: Original strand, 2577145 - 2577233
Alignment:
Q  213 taggtgtgtctcggtgtcggacacgtatcagtgtccgacac---aacacctatgattacacttaattatatcattttcttaaattattatc 300  Q
    |||||| |||| ||||||||||||  ||| || ||||||||   ||||  |||||||||||| |||||| ||||||||| |||||||||||    
T  2577145 taggtgagtcttggtgtcggacacacatcggtatccgacaccggaaca--tatgattacactaaattatgtcattttctcaaattattatc 2577233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 15410454 - 15410499
Alignment:
Q  253 caacacctatgattacacttaattatatcattttcttaaattatta 298  Q
    |||||| |||||||||||| ||| |||| |||||||||||||||||    
T  15410454 caacacatatgattacactgaatcatataattttcttaaattatta 15410499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 301
Target Start/End: Complemental strand, 18162097 - 18162060
Alignment:
Q  264 attacacttaattatatcattttcttaaattattatcc 301  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  18162097 attacactgaattatgtcattttcttaaattattatcc 18162060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 31264495 - 31264446
Alignment:
Q  249 gacacaacacctatgattacacttaattatatcattttcttaaattatta 298  Q
    ||||| |||| |||||||||||| |||||| ||||||||| |||||||||    
T  31264495 gacacgacacttatgattacactgaattatgtcattttctcaaattatta 31264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 18607099 - 18607151
Alignment:
Q  249 gacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    ||||| ||||||||||||||| | |||||| | ||||||| ||||||||||||    
T  18607099 gacacgacacctatgattacattgaattatgttattttctcaaattattatcc 18607151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 21577117 - 21577161
Alignment:
Q  256 cacctatgattacacttaattatatcattttcttaaattattatc 300  Q
    ||||||| ||||||||||||||| | ||||||| |||||||||||    
T  21577117 cacctattattacacttaattatgttattttctcaaattattatc 21577161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 38464313 - 38464361
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggaca 235  Q
    ||||||||||   |||||||||||| |||||||||| ||||||||||||    
T  38464313 ctatgaagcacagacactcctcggattaggtgtgtcccggtgtcggaca 38464361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 42469270 - 42469226
Alignment:
Q  257 acctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    ||||||||||||||| || ||| ||||||||| ||||||||||||    
T  42469270 acctatgattacactaaaatatgtcattttctcaaattattatcc 42469226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 191 - 307
Target Start/End: Original strand, 25651969 - 25652091
Alignment:
Q  191 gaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtcc------gacacaacacctatgattacacttaattatatcatt 284  Q
    |||||| | |||||| ||||| ||||||||||||||||||| |||||| || ||||||      |||||||||||||| | |||||| ||||||||||||    
T  25651969 gaagcactgacactcttcggattaggtgtgtctcggtgtcgaacacgtgtcggtgtccaacactgacacaacacctataactacactgaattatatcatt 25652068  T
Q  285 ttcttaaattattatccttgttg 307  Q
    |||| |||||||||||| |||||    
T  25652069 ttctcaaattattatccgtgttg 25652091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 285
Target Start/End: Complemental strand, 12100374 - 12100290
Alignment:
Q  201 cactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattt 285  Q
    ||||||||||| |||||||||| ||||||||||||||  | |||||| ||||| |||||||| |||||||| |||||||||||||    
T  12100374 cactcctcggactaggtgtgtcccggtgtcggacacgcgttagtgtcagacacgacacctattattacactgaattatatcattt 12100290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 15864913 - 15864838
Alignment:
Q  226 gtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    ||||| ||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||||    
T  15864913 gtgtcagacacgtgtcggtgtccgacacgacacctatgattacactaaattatatcattttttcaaattattatcc 15864838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 301
Target Start/End: Original strand, 24204994 - 24205095
Alignment:
Q  200 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattat 299  Q
    |||||||||| | |||| |||||  |||||||||||||  |||||||||||||| |||| ||| ||||||||  ||||| ||||||||| ||||||||||    
T  24204994 acactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtccgacacgacacttataattacactgtattatgtcattttctcaaattattat 24205093  T
Q  300 cc 301  Q
    ||    
T  24205094 cc 24205095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 300
Target Start/End: Complemental strand, 25074914 - 25074795
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtc------cgacacaacacctatgattacacttaattatat 280  Q
    ||||||||||  ||||||||||||| |||||||||| | ||||||||||||  |  |||||      ||||||||| |||||||||||||| |||||| |    
T  25074914 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgcgttggtgtcagacaccgacacaacgcctatgattacactcaattatgt 25074815  T
Q  281 cattttcttaaattattatc 300  Q
    |||||||| |||||||||||    
T  25074814 cattttctcaaattattatc 25074795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 25892517 - 25892467
Alignment:
Q  249 gacacaacacctatgattacacttaattatatcattttcttaaattattat 299  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  25892517 gacacgacacctatgattacactgaattatatcattttcttaaattattat 25892467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 3730108 - 3730217
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcatttt 286  Q
    ||||||||||   |||||||||||| |||||||||| |||||   |||| | ||  ||||| ||||| ||||||||||||||||| |||||| ||||| |    
T  3730108 ctatgaagcatggacactcctcggattaggtgtgtcccggtg---gacatgcattggtgtcagacacgacacctatgattacactgaattatgtcattat 3730204  T
Q  287 cttaaattattat 299  Q
    || ||||||||||    
T  3730205 ctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 298
Target Start/End: Complemental strand, 55401194 - 55401083
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattt 285  Q
    ||||||||||   |||||||||||| |||| ||||||||||||||||||||| || |||||||||| | |||| | | |||||||| |||||| | ||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacacttgtaattacactaaattatgtgattt 55401096  T
Q  286 tcttaaattatta 298  Q
    | | |||||||||    
T  55401095 tttcaaattatta 55401083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 298
Target Start/End: Complemental strand, 1830394 - 1830351
Alignment:
Q  255 acacctatgattacacttaattatatcattttcttaaattatta 298  Q
    ||||||||||||||||| |||||| |||||||||||||||||||    
T  1830394 acacctatgattacactgaattatgtcattttcttaaattatta 1830351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 309
Target Start/End: Complemental strand, 27903691 - 27903629
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatccttgttgac 309  Q
    |||||||||||| |||||||||| | ||||||||| |||||| |||||||||||  |||||||    
T  27903691 ccgacacaacacttatgattacattaaattatatcgttttctcaaattattatctgtgttgac 27903629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 301
Target Start/End: Complemental strand, 25365564 - 25365467
Alignment:
Q  204 tcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    ||||| || |||| |||||  ||||||| ||||  ||| ||||||||||| |||| |||||||||||  |||||| |||| |||| ||||||||||||    
T  25365564 tcctcagattaggcgtgtcctggtgtcgaacacacatcggtgtccgacacgacacttatgattacaccgaattatgtcatattctcaaattattatcc 25365467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 12704657 - 12704717
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatccttgttg 307  Q
    ||||||| ||||||||||||||| | |||||| ||||||| | |||||||||||| |||||    
T  12704657 ccgacacgacacctatgattacattgaattatgtcattttttcaaattattatccgtgttg 12704717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 40052431 - 40052380
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgt 238  Q
    ||||||||||  ||||||||||||| |||| ||||| |||||||||||||||    
T  40052431 ctatgaagcacgaacactcctcggattaggcgtgtcccggtgtcggacacgt 40052380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 52369906 - 52369843
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccga 250  Q
    ||||||||||   ||||||||||||||||||||||| |||||| |||||||  || ||||||||    
T  52369906 ctatgaagcacggacactcctcggaataggtgtgtcccggtgttggacacgcgtcggtgtccga 52369843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 52369834 - 52369780
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    ||||||| ||||||||||||||| | |||||| | ||||||| ||||||||||||    
T  52369834 ccgacacgacacctatgattacattgaattatgtaattttctcaaattattatcc 52369780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 298
Target Start/End: Complemental strand, 10955056 - 10954960
Alignment:
Q  202 actcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattttcttaaattatta 298  Q
    |||||||||| |||| ||||| | ||||||||||||| || |||||||||| | |||| | |||||||||| |||||| | ||||| | |||||||||    
T  10955056 actcctcggattaggcgtgtcccagtgtcggacacgtgtc-gtgtccgacaccgacacttgtgattacactgaattatgtgattttttcaaattatta 10954960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 14223853 - 14223906
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 300  Q
    ||||||| |||| ||||| |||||| ||||||||| |||||| |||||||||||    
T  14223853 ccgacacgacacttatgaatacactaaattatatcgttttctcaaattattatc 14223906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 300
Target Start/End: Complemental strand, 20691370 - 20691325
Alignment:
Q  255 acacctatgattacacttaattatatcattttcttaaattattatc 300  Q
    |||| |||||||||||| |||||| ||||||||| |||||||||||    
T  20691370 acacatatgattacactgaattatgtcattttctcaaattattatc 20691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 300
Target Start/End: Complemental strand, 21149169 - 21149073
Alignment:
Q  204 tcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattttcttaaattattatc 300  Q
    |||||||| ||||||||| |||||||| |||||   |  |||||||||| | ||| || |||||||||| |||||| ||||||||| |||||||||||    
T  21149169 tcctcggattaggtgtgt-tcggtgtcagacacacgttggtgtccgacaacgacatctttgattacactgaattatgtcattttctcaaattattatc 21149073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 40150579 - 40150624
Alignment:
Q  255 acacctatgattacacttaattatatcattttcttaaattattatc 300  Q
    |||| |||||||||| | |||||||||||||||| |||||||||||    
T  40150579 acacatatgattacattgaattatatcattttctcaaattattatc 40150624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 298
Target Start/End: Original strand, 40993275 - 40993387
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatca-tt 284  Q
    ||||||||||   |||||||||||| |||| ||||| |||||||||||| || || |||||||||| | |||| ||| |||||||| |||||| | | ||    
T  40993275 ctatgaagcatggacactcctcggattaggcgtgtcccggtgtcggacatgtgtc-gtgtccgacaccgacacatataattacactgaattatgtgattt 40993373  T
Q  285 ttcttaaattatta 298  Q
    || |||||||||||    
T  40993374 tttttaaattatta 40993387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 286
Target Start/End: Complemental strand, 7171620 - 7171521
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattt 285  Q
    ||||||||||   |||||||| ||| |||| ||||| ||||||||||||||| || |||||||||| |||||| | | |||||||  |||||||| ||||    
T  7171620 ctatgaagcatatacactccttggattaggcgtgtcgcggtgtcggacacgtgtc-gtgtccgacaccaacacttgtaattacaccgaattatatgattt 7171522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 200 - 300
Target Start/End: Complemental strand, 12278941 - 12278841
Alignment:
Q  200 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattat 299  Q
    |||||||| ||| |||||||||| ||||||| ||||||  |  ||||||||||| |||| ||| |||||||| |||||| ||||||||||||||||||||    
T  12278941 acactcctaggattaggtgtgtcccggtgtcagacacgcgttggtgtccgacacgacacatataattacactgaattatgtcattttcttaaattattat 12278842  T
Q  300 c 300  Q
    |    
T  12278841 c 12278841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 23751980 - 23751905
Alignment:
Q  226 gtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    ||||| ||||||  || ||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||||    
T  23751980 gtgtctgacacgcgtcggtgtccgacacgacacctatgattacactaaattatatcattttatcaaattattatcc 23751905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 29812664 - 29812716
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattat 299  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||    
T  29812664 ccgacacgacacctatgattacactaaattatatcattttctcaaattattat 29812716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 23930278 - 23930224
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    ||||||||||||||||||||||||| |||||| ||||||||| |||||| |||||    
T  23930278 ccgacacaacacctatgattacactgaattatgtcattttctcaaattactatcc 23930224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 296
Target Start/End: Original strand, 7133210 - 7133327
Alignment:
Q  185 aactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac------aacacctatgattacacttaattat 278  Q
    ||||||||||||   || |||||| || |||||||||| | ||||||||||||  || |||||||||||      | |||||||||||||||| ||||||    
T  7133210 aactatgaagcacggacgctcctcagattaggtgtgtcccagtgtcggacacgcgtcggtgtccgacaccgacacaccacctatgattacactgaattat 7133309  T
Q  279 atcattttcttaaattat 296  Q
     ||||||||| |||||||    
T  7133310 gtcattttctcaaattat 7133327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 17852120 - 17852056
Alignment:
Q  186 actatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgac 251  Q
    |||||||||||   |||||||||| | |||||||||||||||||||||||||| ||| ||||||||    
T  17852120 actatgaagcacggacactcctcgaattaggtgtgtctcggtgtcggacacgtgtca-tgtccgac 17852056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 300
Target Start/End: Complemental strand, 32855409 - 32855360
Alignment:
Q  251 cacaacacctatgattacacttaattatatcattttcttaaattattatc 300  Q
    |||||||| |||||||||| | ||||| ||||||||||||||||||||||    
T  32855409 cacaacacatatgattacattcaattaaatcattttcttaaattattatc 32855360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 5409771 - 5409842
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacc 259  Q
    ||||||||||   |||||||||||| |||| ||||| ||||||||||||||| || ||||||||||| |||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacacgacacc 5409842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 298
Target Start/End: Complemental strand, 15680928 - 15680817
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattt 285  Q
    ||||||||||   |||||||||| | |||  ||||||||||||||||||||| || |||||||||| | |||| ||| |||||||| |||||| | ||||    
T  15680928 ctatgaagcacggacactcctcgaattagacgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacacttataattacactaaattatgtgattt 15680830  T
Q  286 tcttaaattatta 298  Q
    | || ||||||||    
T  15680829 tttttaattatta 15680817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 4017797 - 4017848
Alignment:
Q  250 acacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    |||| |||| |||||||||||| ||||||||| |||||| ||||||||||||    
T  4017797 acacgacacttatgattacactaaattatatcgttttctcaaattattatcc 4017848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 22683758 - 22683809
Alignment:
Q  250 acacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    |||| |||||||||||| |||| ||||||||||| |||| ||||||||||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattatcc 22683809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 32093952 - 32094026
Alignment:
Q  185 aactatgaagcagtaacactcctcggaataggtgtgt-ctcggtgtcggacacgtatcagtgtccgacacaacacc 259  Q
    ||||||||||||  ||||||||||||| |||| |||| | ||||||||||||||| || ||||||||||| |||||    
T  32093952 aactatgaagcacgaacactcctcggattaggcgtgtccccggtgtcggacacgtgtc-gtgtccgacacgacacc 32094026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 32308249 - 32308202
Alignment:
Q  188 tatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggaca 235  Q
    |||||||||  ||||||||||||| ||| |||||||||||||||||||    
T  32308249 tatgaagcatgaacactcctcggattagctgtgtctcggtgtcggaca 32308202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 17780084 - 17780138
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    ||||||| |||||||| ||||||   |||||| ||||||||||||||||||||||    
T  17780084 ccgacacgacacctattattacatagaattatgtcattttcttaaattattatcc 17780138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 32287416 - 32287468
Alignment:
Q  200 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 253  Q
    |||||||||||| |||||||||| ||||||||||||| | ||| ||||||||||    
T  32287416 acactcctcggattaggtgtgtcccggtgtcggacacttgtca-tgtccgacac 32287468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 298
Target Start/End: Complemental strand, 598327 - 598216
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattt 285  Q
    ||||||||||   ||||| |||||| |||| ||||| ||||||||||||||| || ||||| |||| | |||| ||  |||||| |||||||  | ||||    
T  598327 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtctgacaccgacacttacaattacatttaattacgtgattt 598229  T
Q  286 tcttaaattatta 298  Q
    |||||||||||||    
T  598228 tcttaaattatta 598216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 187 - 311
Target Start/End: Original strand, 22794018 - 22794142
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcatttt 286  Q
    ||||||||||   |||||||||| | |||||||||| ||| |||||||| |  |||||||| ||||| |||||||| ||||||||  ||||| |||||||    
T  22794018 ctatgaagcacgtacactcctcgaattaggtgtgtcccggagtcggacatgcgtcagtgtcggacacgacacctataattacactgtattatgtcatttt 22794117  T
Q  287 cttaaattattatccttgttgacgt 311  Q
     | |||||||||||| |||||||||    
T  22794118 ttcaaattattatccgtgttgacgt 22794142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 42004947 - 42005001
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  42004947 ccgacacaacacctatgattacactaaattatgtcattttctcaaattattatcc 42005001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 6936402 - 6936461
Alignment:
Q  249 gacacaacacctatgattacacttaattatatcattttcttaaattattatccttgttga 308  Q
    ||||| |||||||||||||||||||||||| ||||||||| | |||||||||| ||||||    
T  6936402 gacacgacacctatgattacacttaattatgtcattttctcagattattatccgtgttga 6936461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 6574047 - 6573994
Alignment:
Q  248 cgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||||||| ||||    
T  6574047 cgacacaacacctatgattacactaaattatatcattgtctcaaattatcatcc 6573994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 300
Target Start/End: Complemental strand, 19637872 - 19637774
Alignment:
Q  202 actcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacaca-acacctatgattacacttaattatatcattttcttaaattattatc 300  Q
    |||||||||| |||| | ||| |||||||||| | ||||| |||||||||||  |||| |||||||||| | ||| || |||||||||||||||||||||    
T  19637872 actcctcggattaggggcgtcccggtgtcggatatgtatc-gtgtccgacaccgacacatatgattacattgaataatgtcattttcttaaattattatc 19637774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 298
Target Start/End: Original strand, 46348320 - 46348434
Alignment:
Q  184 aaactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatca 282  Q
    |||||||||||||   |||| |||||||  ||| ||||||||||||||||||||| || |||||||||| | |||| | | |||||||| |||||||| |    
T  46348320 aaactatgaagcacggacacacctcggatcaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacacttgtaattacactaaattatatga 46348418  T
Q  283 ttttcttaaattatta 298  Q
    |||| | |||||||||    
T  46348419 ttttttcaaattatta 46348434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 29415819 - 29415754
Alignment:
Q  235 acgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 300  Q
    |||| |||||||| |||||||||| | ||||||  || |||||| |||||||||||||||||||||    
T  29415819 acgtgtcagtgtctgacacaacacatgtgattatgctgaattatgtcattttcttaaattattatc 29415754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 1486657 - 1486715
Alignment:
Q  200 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacc 259  Q
    |||||||||||| |||| ||||| ||||||||||||||| || ||||||||||| |||||    
T  1486657 acactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacacgacacc 1486715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 15323287 - 15323236
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgt 238  Q
    ||||||| || | |||||||||||| ||||||||| ||||||||||||||||    
T  15323287 ctatgaaacactgacactcctcggattaggtgtgtttcggtgtcggacacgt 15323236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 7988446 - 7988504
Alignment:
Q  243 gtgtccgacac-aacacctatgattacacttaattatatcattttcttaaattattatc 300  Q
    ||||||||||| ||||| |||||||||| | |||||| ||| |||||||||||||||||    
T  7988446 gtgtccgacaccaacacttatgattacattgaattatgtcactttcttaaattattatc 7988504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 276
Target Start/End: Original strand, 9690213 - 9690303
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgac-acaacacctatgattacacttaatt 276  Q
    ||||||||||  |||||||  |||| |||| ||||| ||||||||||||||| |||||| |||||  | |||| |||||||||||| ||||    
T  9690213 ctatgaagcacaaacactctccggattaggcgtgtcccggtgtcggacacgtgtcagtggccgacgccgacacatatgattacactgaatt 9690303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 18190061 - 18190099
Alignment:
Q  200 acactcctcggaataggtgtgtctcggtgtcggacacgt 238  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  18190061 acactcctcggattaggtgtgtcccggtgtcggacacgt 18190099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 298
Target Start/End: Original strand, 22515825 - 22515938
Alignment:
Q  185 aactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcat 283  Q
    ||||||||||||   |||||||||||| |||| |||||||||||||||| | || || |||||||||| | |||| | | |||||||| |||||| | ||    
T  22515825 aactatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatatgtgtc-gtgtccgacaccgacacttgtaattacactaaattatgtgat 22515923  T
Q  284 tttcttaaattatta 298  Q
    ||| | |||||||||    
T  22515924 tttttcaaattatta 22515938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 23219615 - 23219656
Alignment:
Q  199 aacactcctcggaataggtgtgtctcggtgtcggacacgtat 240  Q
    |||||| |||||| |||||||||| |||||||||||||||||    
T  23219615 aacacttctcggattaggtgtgtcacggtgtcggacacgtat 23219656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 298
Target Start/End: Original strand, 12040690 - 12040734
Alignment:
Q  255 acacctatgattacacttaa-ttatatcattttcttaaattatta 298  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||    
T  12040690 acacctatgattatactgaaattatatcattttcttaaattatta 12040734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 28676183 - 28676215
Alignment:
Q  264 attacacttaattatatcattttcttaaattat 296  Q
    ||||||||||||||||| |||||||||||||||    
T  28676183 attacacttaattatattattttcttaaattat 28676215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 299
Target Start/End: Original strand, 39101190 - 39101234
Alignment:
Q  255 acacctatgattacacttaattatatcattttcttaaattattat 299  Q
    |||||||| ||||||||||||||| | ||||||| ||||||||||    
T  39101190 acacctataattacacttaattatgttattttctcaaattattat 39101234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 48415728 - 48415780
Alignment:
Q  250 acacaacacctatgattacacttaattatatcattttctt-aaattattatcc 301  Q
    |||| ||| ||||||||||||| |||||||||||||| || ||||||||||||    
T  48415728 acacgacatctatgattacactaaattatatcatttttttaaaattattatcc 48415780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 6389802 - 6389748
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  6389802 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatcc 6389748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 19602181 - 19602234
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 300  Q
    ||||||||| ||||||||||||||| |||||||||||||||| |||||||||||    
T  19602181 ccgacacaatacctatgattacactgaattatatcattttctcaaattattatc 19602234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 34446624 - 34446570
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    ||||||| ||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  34446624 ccgacacgacacctatgattacactgaattatgtcattttctcaaattattatcc 34446570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 17168463 - 17168516
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 300  Q
    ||||||| |||||||| |||||||| |||||||||||||||| |||||||||||    
T  17168463 ccgacacgacacctattattacactaaattatatcattttctcaaattattatc 17168516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 301
Target Start/End: Original strand, 12235485 - 12235573
Alignment:
Q  213 taggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    |||| ||||| ||||| |||||||   || ||||| ||||| ||||||||||||||||| |||||| |||||||||  |||||||||||    
T  12235485 taggggtgtcccggtgccggacacacgtcggtgtcggacacgacacctatgattacactgaattatgtcattttctctaattattatcc 12235573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 8776908 - 8776959
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgt 238  Q
    ||||||||||   |||||||||||| ||||||||||||||||||||||||||    
T  8776908 ctatgaagcacggacactcctcggattaggtgtgtctcggtgtcggacacgt 8776959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 2153895 - 2153937
Alignment:
Q  255 acacctatgattacacttaattatatcattttcttaaattatt 297  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  2153895 acacctataattacactaaattatatcattttcttaaattatt 2153937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 12086344 - 12086409
Alignment:
Q  246 tccgacacaacacctatgattacacttaattatatcattttcttaaattattatccttgttgacgt 311  Q
    |||||||| ||||||||||||| ||| |||||| ||||| ||| |||||||||||| ||| |||||    
T  12086344 tccgacacgacacctatgattaaactgaattatgtcattatctcaaattattatccgtgtcgacgt 12086409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 298
Target Start/End: Complemental strand, 34595253 - 34595142
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattt 285  Q
    ||||||||||   |||||||||||| |||||||||| ||||||| ||||||| || |||||||||| | |||| | | |||||||| |||||| | ||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtc-gtgtccgacaccgacacttgtaattacactgaattatgtgattt 34595155  T
Q  286 tcttaaattatta 298  Q
    | | |||||||||    
T  34595154 tttcaaattatta 34595142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 28152218 - 28152152
Alignment:
Q  186 actatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 253  Q
    |||||||||||  ||||||||||||| ||||  |||| ||||||||||||||| || |||||||||||    
T  28152218 actatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtc-gtgtccgacac 28152152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 298
Target Start/End: Original strand, 30781302 - 30781345
Alignment:
Q  255 acacctatgattacacttaattatatcattttcttaaattatta 298  Q
    ||||||||||||||| |||||||| ||||||||| |||||||||    
T  30781302 acacctatgattacaattaattatgtcattttctcaaattatta 30781345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 6299563 - 6299517
Alignment:
Q  255 acacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    |||||||| |||||| | |||||||||||||||| ||||||||||||    
T  6299563 acacctatcattacattgaattatatcattttctcaaattattatcc 6299517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 6306373 - 6306327
Alignment:
Q  255 acacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    |||||||| |||||| | |||||||||||||||| ||||||||||||    
T  6306373 acacctatcattacattgaattatatcattttctcaaattattatcc 6306327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 13364645 - 13364754
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacaca-acacctatgattacacttaattatatcattt 285  Q
    ||||||||||   |||||| |||||||||  |||||  |||||| |||| ||||| |||||| ||||  |||| |||||||||||| |||||||| ||||    
T  13364645 ctatgaagcacagacactcgtcggaatagacgtgtcctggtgtcagacatgtatc-gtgtccaacaccgacacatatgattacactgaattatatgattt 13364743  T
Q  286 tcttaaattat 296  Q
    ||| |||||||    
T  13364744 tctcaaattat 13364754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 26247485 - 26247431
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    ||||||| | ||||||||||| ||| || ||| ||||||||||||||||||||||    
T  26247485 ccgacacgaaacctatgattatactaaaatatgtcattttcttaaattattatcc 26247431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 7625170 - 7625117
Alignment:
Q  258 cctatgattacacttaattatatcattttcttaaattattatccttgttgacgt 311  Q
    ||||| |||| ||| |||||||||||||||| |||||||||||| ||| |||||    
T  7625170 cctataattatactaaattatatcattttctcaaattattatccgtgtcgacgt 7625117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 4420185 - 4420225
Alignment:
Q  253 caacacctatgattacacttaattatatcattttcttaaat 293  Q
    ||||||||||| ||||||| |||||||||||||||| ||||    
T  4420185 caacacctatggttacactgaattatatcattttctcaaat 4420225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 8389421 - 8389457
Alignment:
Q  200 acactcctcggaataggtgtgtctcggtgtcggacac 236  Q
    |||||||||||| |||||||||| |||||||||||||    
T  8389421 acactcctcggattaggtgtgtcccggtgtcggacac 8389457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 31959256 - 31959220
Alignment:
Q  200 acactcctcggaataggtgtgtctcggtgtcggacac 236  Q
    |||||||||||| |||||||||| |||||||||||||    
T  31959256 acactcctcggattaggtgtgtcccggtgtcggacac 31959220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 299
Target Start/End: Original strand, 34895042 - 34895086
Alignment:
Q  255 acacctatgattacacttaattatatcattttcttaaattattat 299  Q
    ||||||||||||||||| |||| ||| ||||||| ||||||||||    
T  34895042 acacctatgattacactgaattgtataattttctcaaattattat 34895086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 301
Target Start/End: Complemental strand, 12748747 - 12748689
Alignment:
Q  243 gtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    ||||||||||||||||||||||||||||| || ||| ||||||||| ||||||||||||    
T  12748747 gtgtccgacacaacacctatgattacactgaactatgtcattttctcaaattattatcc 12748689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 23354652 - 23354705
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 300  Q
    ||||||| ||||||||||||||||| |||||||||||||||| |||||||||||    
T  23354652 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatc 23354705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 25544540 - 25544488
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattat 299  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||    
T  25544540 ccgacacgacacctatgattacactgaattatatcattttctcaaattattat 25544488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 300
Target Start/End: Complemental strand, 24011148 - 24011042
Alignment:
Q  200 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacaca------acacctatgattacacttaattatatcattttcttaaat 293  Q
    |||||| ||||| || |||||||| ||||||||||||| ||| || || |||||       ||||||||||||||||| |||||| ||||||||| ||||    
T  24011148 acactcttcggattatgtgtgtcttggtgtcggacacgcatccgtatcagacaccgacgcgacacctatgattacactaaattatgtcattttctcaaat 24011049  T
Q  294 tattatc 300  Q
    |||||||    
T  24011048 tattatc 24011042  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 298
Target Start/End: Original strand, 18840951 - 18841064
Alignment:
Q  185 aactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcat 283  Q
    ||||||||||||   |||||||||||| |||||||||| |||||||||||| || || ||||| |||| | |||| | | ||||||||||||||| | ||    
T  18840951 aactatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtc-gtgtctgacaccgacacttgtaattacacttaattatgtaat 18841049  T
Q  284 tttcttaaattatta 298  Q
    ||| | |||||||||    
T  18841050 tttttcaaattatta 18841064  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 300
Target Start/End: Original strand, 34006930 - 34007044
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacaca-acacctatgattacacttaattatatcattt 285  Q
    ||||||||||   |||||||| | | |||||||||  ||||||| |||||| ||  |||||| ||||  ||||||||||||||||| |||||| ||| ||    
T  34006930 ctatgaagcacggacactccttgaattaggtgtgttccggtgtcagacacgaataggtgtcccacaccgacacctatgattacactgaattatgtcaatt 34007029  T
Q  286 tcttaaattattatc 300  Q
    ||| |||||||||||    
T  34007030 tctcaaattattatc 34007044  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 23355003 - 23355048
Alignment:
Q  255 acacctatgattacacttaattatatcattttcttaaattattatc 300  Q
    |||||||||||| |||| |||||||||||||||| |||||||||||    
T  23355003 acacctatgattgcactaaattatatcattttctcaaattattatc 23355048  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 8817470 - 8817520
Alignment:
Q  261 atgattacacttaattatatcattttcttaaattattatccttgttgacgt 311  Q
    ||||||||||| ||||||| ||| ||||||||||||||||  |||||||||    
T  8817470 atgattacactgaattataccatgttcttaaattattatcggtgttgacgt 8817520  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 300
Target Start/End: Original strand, 10535762 - 10535812
Alignment:
Q  250 acacaacacctatgattacacttaattatatcattttcttaaattattatc 300  Q
    |||| |||| |||||||||||| |||||| ||||||||| |||||||||||    
T  10535762 acacgacacttatgattacactgaattatgtcattttctcaaattattatc 10535812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 299
Target Start/End: Complemental strand, 22085049 - 22085011
Alignment:
Q  261 atgattacacttaattatatcattttcttaaattattat 299  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  22085049 atgattacactaaattatgtcattttcttaaattattat 22085011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 27084388 - 27084323
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 253  Q
    |||||||||||  ||||||||| || |||| |||||||||||| |||||||| || |||||||||||    
T  27084388 ctatgaagcagagacactcctccgattaggcgtgtctcggtgttggacacgtgtc-gtgtccgacac 27084323  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 30563468 - 30563414
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    ||||||||||||||||  ||||| | |||||| ||||||||| ||||||||||||    
T  30563468 ccgacacaacacctatagttacattgaattatgtcattttctcaaattattatcc 30563414  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 37419873 - 37419808
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 253  Q
    ||||||||||   |||||||||||| |||| ||||| |||||||||||||| ||| |||||||||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatc-gtgtccgacac 37419808  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 300
Target Start/End: Complemental strand, 38919262 - 38919212
Alignment:
Q  250 acacaacacctatgattacacttaattatatcattttcttaaattattatc 300  Q
    |||| ||||||||||||||||| || |||| |||||||| |||||||||||    
T  38919262 acacgacacctatgattacactaaactataacattttctcaaattattatc 38919212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 11308004 - 11308053
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattat 296  Q
    ||||||| ||||||||||||||||| |||||| ||||||| | |||||||    
T  11308004 ccgacacgacacctatgattacactgaattatgtcattttttcaaattat 11308053  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 19574037 - 19573984
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 300  Q
    |||||||  ||||||| |||||||| |||||| | |||||||||||||||||||    
T  19574037 ccgacacgccacctataattacactgaattatgttattttcttaaattattatc 19573984  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 299
Target Start/End: Original strand, 4229416 - 4229460
Alignment:
Q  255 acacctatgattacacttaattatatcattttcttaaattattat 299  Q
    |||| |||||||||||| |||||| ||||| ||||||||||||||    
T  4229416 acacatatgattacactgaattatgtcattctcttaaattattat 4229460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 19980794 - 19980746
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggaca 235  Q
    ||||||||||  |||||| |||||| ||||||||||||| |||||||||    
T  19980794 ctatgaagcatgaacacttctcggattaggtgtgtctcgatgtcggaca 19980746  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 300
Target Start/End: Complemental strand, 31026741 - 31026701
Alignment:
Q  260 tatgattacacttaattatatcattttcttaaattattatc 300  Q
    |||||||||| | |||||| |||||||||||||||||||||    
T  31026741 tatgattacattgaattatgtcattttcttaaattattatc 31026701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 207 - 312
Target Start/End: Complemental strand, 2048 - 1943
Alignment:
Q  207 tcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatccttgtt 306  Q
    ||||| |||||||||   |||||| |||| || || ||||||||||| ||||||||||||||||| || ||| ||||||||  |||||||||||| |||     
T  2048 tcggattaggtgtgtgcaggtgtcagacatgtgtcggtgtccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtc 1949  T
Q  307 gacgta 312  Q
    ||||||    
T  1948 gacgta 1943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 8053 - 8107
Alignment:
Q  247 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 301  Q
    ||||||| | ||||||| ||||||| |||||| ||||||||| ||||||||||||    
T  8053 ccgacacgatacctatgtttacactgaattatgtcattttctcaaattattatcc 8107  T

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Target: scaffold0778 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 4453 - 4412
Alignment:
Q  259 ctatgattacacttaattatatcattttcttaaattattatc 300  Q
    ||||||| ||||| ||||||||||| ||||||||||||||||    
T  4453 ctatgatgacactgaattatatcatattcttaaattattatc 4412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 415 - 452
Alignment:
Q  200 acactcctcggaataggtgtgtctcggtgtcggacacg 237  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  415 acactcctcggattaggtgtgtcccggtgtcggacacg 452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 298
Target Start/End: Complemental strand, 8902 - 8806
Alignment:
Q  202 actcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattttcttaaattatta 298  Q
    ||||||| || |||| ||||||||||||||||||||| || |||||||||| | |||| | | |||||||| ||| |||| ||||| | |||||||||    
T  8902 actcctcagattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacacttgtaattacactaaataatatgattttttcaaattatta 8806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 56973 - 56932
Alignment:
Q  255 acacctatgattacacttaattatatcattttcttaaattat 296  Q
    |||| |||||||||||| |||||||||||||||| |||||||    
T  56973 acacttatgattacactgaattatatcattttctcaaattat 56932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 298
Target Start/End: Complemental strand, 14646 - 14538
Alignment:
Q  187 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcatttt 286  Q
    ||||||||||   ||||||||  || |||| ||||||||||||||||||||| || |||||||||||  ||| | | |||||||| |||||| | |||||    
T  14646 ctatgaagcacgtacactccttcgattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacac--cacttgtaattacactgaattatgtgatttt 14550  T
Q  287 cttaaattatta 298  Q
     | |||||||||    
T  14549 ttcaaattatta 14538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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