View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3828_low_16 (Length: 299)

Name: NF3828_low_16
Description: NF3828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3828_low_16
NF3828_low_16
[»] chr4 (7 HSPs)
chr4 (10-293)||(25252466-25252749)
chr4 (10-293)||(25168517-25168800)
chr4 (10-287)||(25180191-25180468)
chr4 (10-283)||(25159966-25160239)
chr4 (15-84)||(25000782-25000851)
chr4 (38-84)||(24986312-24986358)
chr4 (163-253)||(25189179-25189269)
[»] chr3 (1 HSPs)
chr3 (10-253)||(9213706-9213949)
[»] chr6 (2 HSPs)
chr6 (24-85)||(29460042-29460103)
chr6 (15-83)||(29422961-29423029)
[»] chr2 (1 HSPs)
chr2 (151-253)||(42156551-42156653)
[»] chr5 (1 HSPs)
chr5 (159-223)||(30361051-30361115)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 293
Target Start/End: Original strand, 25252466 - 25252749
Alignment:
Q  10 aagaatatgcggaactttgctttaaaacatttggagatagagtaaaacattggataactttgaatgaaccatggacttacagtcaagatgggtatgcaaa 109  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25252466 aagactatgcggaactttgcttcaaaacatttggagatagagtaaaacattggataactttgaatgaaccatggacttacagtcaagatgggtatgcaaa 25252565  T
Q  110 tggtgaaatggcaccgggccgatgctcttcttggttgaatccaaattgtaccggtggtgattctggaacagaaccttatttagttgcacattatcaactt 209  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25252566 tggtgaaatggcaccaggacgatgctcttcttggttgaatccaaattgcaccggcggtgattctggaacagaaccttatttagttgcacattatcaactt 25252665  T
Q  210 ctagctcatgcagcagttgttaatttgtacaagaccaagtatcaagtctctcaaaagggtgtgataggtataacattggttatt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25252666 ctagctcatgcagcagttgttaatttgtacaagaccaagtatcaagtctctcaaaagggtgtgataggtataacattggttatt 25252749  T

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Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 293
Target Start/End: Complemental strand, 25168800 - 25168517
Alignment:
Q  10 aagaatatgcggaactttgctttaaaacatttggagatagagtaaaacattggataactttgaatgaaccatggacttacagtcaagatgggtatgcaaa 109  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25168800 aagactatgcggaactttgcttcaaaacatttggagatagagtaaaacattggataactttgaatgaaccatggacttacagtcaagatgggtatgcaaa 25168701  T
Q  110 tggtgaaatggcaccgggccgatgctcttcttggttgaatccaaattgtaccggtggtgattctggaacagaaccttatttagttgcacattatcaactt 209  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  25168700 tggtgaaatggcacctggtcgatgctcttcttggttgaatccaaattgcaccggcggtgattctggaactgaaccttatttagttgcacattatcaactt 25168601  T
Q  210 ctagctcatgcagcagttgttaatttgtacaagaccaagtatcaagtctctcaaaagggtgtgataggtataacattggttatt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25168600 ctagctcatgcagcagttgttaatttgtacaagaccaagtatcaagtctctcaaaagggtgtgataggtataacattggttatt 25168517  T

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Target: chr4; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 10 - 287
Target Start/End: Complemental strand, 25180468 - 25180191
Alignment:
Q  10 aagaatatgcggaactttgctttaaaacatttggagatagagtaaaacattggataactttgaatgaaccatggacttacagtcaagatgggtatgcaaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||| ||||||||    
T  25180468 aagactatgcggaactttgctttaaaacatttggagatagagtaaaacattggataactttgaatgagccatggagttacagtcaaaatggatatgcaaa 25180369  T
Q  110 tggtgaaatggcaccgggccgatgctcttcttggttgaatccaaattgtaccggtggtgattctggaacagaaccttatttagttgcacattatcaactt 209  Q
    ||| | ||||||||| || ||||| ||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  25180368 tggcgcaatggcaccaggtcgatgttcttcttggtttaatccaaattgcaccggtggagattctggaaccgaaccttatttagttgcacattatcaactt 25180269  T
Q  210 ctagctcatgcagcagttgttaatttgtacaagaccaagtatcaagtctctcaaaagggtgtgataggtataacattg 287  Q
    |||||||||||||||| ||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  25180268 ctagctcatgcagcagctgttaatgtgtacaagactaaatatcaagtctctcaaaagggtgtgataggtataacattg 25180191  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 283
Target Start/End: Complemental strand, 25160239 - 25159966
Alignment:
Q  10 aagaatatgcggaactttgctttaaaacatttggagatagagtaaaacattggataactttgaatgaaccatggacttacagtcaagatgggtatgcaaa 109  Q
    |||| |||||||||||||| || ||   |||||| |||||||| ||  ||||| | |||||||| || |||||||  || || ||| |||| ||||||||    
T  25160239 aagactatgcggaactttgtttcaaggaatttggtgatagagtcaagtattgggttactttgaacgagccatggagctatagccaaaatggctatgcaaa 25160140  T
Q  110 tggtgaaatggcaccgggccgatgctcttcttggttgaatccaaattgtaccggtggtgattctggaacagaaccttatttagttgcacattatcaactt 209  Q
    |||   |||||||||||| || |||||   ||||||||||||||||||||| || ||||||||||  |  || || ||||| ||  ||||||| ||||||    
T  25160139 tgggcgaatggcaccgggtcgttgctccagttggttgaatccaaattgtactggcggtgattctgcgatcgagccctatttggtaacacattaccaactt 25160040  T
Q  210 ctagctcatgcagcagttgttaatttgtacaagaccaagtatcaagtctctcaaaagggtgtgataggtataac 283  Q
    || || ||||| ||||  ||| || |||||||||  |||||| |||  |||||||||||||| ||||| |||||    
T  25160039 cttgcacatgccgcagccgttgatgtgtacaagaaaaagtataaagaatctcaaaagggtgtaataggcataac 25159966  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 25000782 - 25000851
Alignment:
Q  15 tatgcggaactttgctttaaaacatttggagatagagtaaaacattggataactttgaatgaaccatgga 84  Q
    ||||| ||||||||||| ||   |||||| ||||| || ||||||||||| |||||||||||||||||||    
T  25000782 tatgctgaactttgcttcaaggaatttggcgatagggtgaaacattggattactttgaatgaaccatgga 25000851  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 24986358 - 24986312
Alignment:
Q  38 atttggagatagagtaaaacattggataactttgaatgaaccatgga 84  Q
    |||||| ||||| || ||||||||||| |||||||||||||||||||    
T  24986358 atttggtgatagggtgaaacattggattactttgaatgaaccatgga 24986312  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 25189269 - 25189179
Alignment:
Q  163 gtggtgattctggaacagaaccttatttagttgcacattatcaacttctagctcatgcagcagttgttaatttgtacaagaccaagtatca 253  Q
    ||||| ||||||| |||||||||||| ||||| ||||| ||||| | || |||||||||| || |||  || |||| |||| |||||||||    
T  25189269 gtggtaattctggcacagaaccttatatagttacacataatcaaatccttgctcatgcagaagctgtacatgtgtataagatcaagtatca 25189179  T

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Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 9213706 - 9213949
Alignment:
Q  10 aagaatatgcggaactttgctttaaaacatttggagatagagtaaaacattggataactttgaatgaaccatggacttacagtcaagatgggtatgcaaa 109  Q
    |||| ||||| ||||||||||||||    ||||| ||||| || ||| ||||| | ||||||||||||||||||| |||||||||| |||| ||||||||    
T  9213706 aagactatgctgaactttgctttaaggagtttggtgatagggtgaaatattgggttactttgaatgaaccatggagttacagtcaaaatggctatgcaaa 9213805  T
Q  110 tggtgaaatggcaccgggccgatgctcttcttggttgaatccaaattgtaccggtggtgattctggaacagaaccttatttagttgcacattatcaactt 209  Q
    |||   ||||||||| || || || |||  |||||||||||||||||| ||||||||||||||||  |  || || ||| ||||  |||| || ||||||    
T  9213806 tggacgaatggcaccaggtcgttgttctagttggttgaatccaaattgcaccggtggtgattctgcgattgagccctatatagtcacacactaccaactt 9213905  T
Q  210 ctagctcatgcagcagttgttaatttgtacaagaccaagtatca 253  Q
    ||||||||||| | || ||| ||| |||||||||| ||||||||    
T  9213906 ctagctcatgccgaagctgtaaatgtgtacaagacaaagtatca 9213949  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 29460103 - 29460042
Alignment:
Q  24 ctttgctttaaaacatttggagatagagtaaaacattggataactttgaatgaaccatggac 85  Q
    ||||| ||||||  |||||||||||| ||||| |||||||| || |||||||||||||||||    
T  29460103 ctttgttttaaagaatttggagatagggtaaagcattggatcacattgaatgaaccatggac 29460042  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 29422961 - 29423029
Alignment:
Q  15 tatgcggaactttgctttaaaacatttggagatagagtaaaacattggataactttgaatgaaccatgg 83  Q
    |||||||| ||||||||||||  ||| || || ||||||||||||||||| ||  ||||||||||||||    
T  29422961 tatgcggagctttgctttaaagaattcggggacagagtaaaacattggatcacactgaatgaaccatgg 29423029  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 253
Target Start/End: Complemental strand, 42156653 - 42156551
Alignment:
Q  151 caaattgtaccggtggtgattctggaacagaaccttatttagttgcacattatcaacttctagctcatgcagcagttgttaatttgtacaagaccaagta 250  Q
    ||||||| |||||||||||||| || | ||| |||||  ||||| | ||| | |||||||| |||||||| ||||||||  || |||||||||  |||||    
T  42156653 caaattgcaccggtggtgattcagggaaagagccttacatagtttcgcatcaccaacttctcgctcatgccgcagttgtccatgtgtacaagaagaagta 42156554  T
Q  251 tca 253  Q
    |||    
T  42156553 tca 42156551  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 30361051 - 30361115
Alignment:
Q  159 accggtggtgattctggaacagaaccttatttagttgcacattatcaacttctagctcatgcagc 223  Q
    |||||||||||||| || ||||| || ||||||||||||||| | | ||| || |||||||||||    
T  30361051 accggtggtgattcggggacagagccatatttagttgcacatcacctactccttgctcatgcagc 30361115  T

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