View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3828_low_2 (Length: 556)
Name: NF3828_low_2
Description: NF3828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3828_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 16 - 550
Target Start/End: Complemental strand, 36154781 - 36154247
Alignment:
| Q |
16 |
cattgactgctccggtagccatacttacttgagtgccaccataagtagtgacgttcagttgaagcctagcatcatcaccggcttgtgtttgaacagggtt |
115 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154781 |
cattgactgctccggtagccatactaacttgactgccaccataagtagtgacgttcagttgaagcctagcatcatcaccggcttgtgtttgaacagggtt |
36154682 |
T |
|
| Q |
116 |
ggttaaggtatcgaagtttgaaatagaaacgaatgaagcaagggagtgaaactgtaagagttcgactttttgtctatcagtgagggagttgaggaaccct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154681 |
ggttaaggtatcgaagtttgaaatagaaacgaatgaagcaagggagtgaaactgtaagagttcgactttttgtctatcagtgagggagttgaggaaccct |
36154582 |
T |
|
| Q |
216 |
gctttgagtttggagaatgaagaatcttctggcgcaaaaatggttaacccaccggaacctgatggcgatgataccagctgcgagttgagttgattgatta |
315 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154581 |
gctttgagtttggagaatgcagaatcttctggtgcaaaaatggttaaccctccggaacctgatggcgatgataccagctgcgagttgagttgattgatta |
36154482 |
T |
|
| Q |
316 |
attgtgttgttttgagaagacggattagaacggagaaccttttggctttttgaagaatgttgattatgtcaatggtgggtccttttgggattgttatggt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36154481 |
attgtgttgttttgagaagacggattagaacggagaaccttttggctttttgaagaatgttgattatgtcaatggtgggtccttttgggactgttatggt |
36154382 |
T |
|
| Q |
416 |
gggtgatggtgctccagttggtgttgttggaacaagcggaactgtacttaatcctggtgatggtgctgttgctgttgttgctggtaatggtggtgatgct |
515 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154381 |
gggtgatggtgcaccagttggtgttgttggaacaagcggaactgtacttaatcctggtgatggtgctgttgctgttgttgctggtaatggtggtgatgct |
36154282 |
T |
|
| Q |
516 |
gttgttgatggtaagggtggtgagggtgatgatgt |
550 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
36154281 |
gttgttgatggtaagggtggtgagggtgatgatgt |
36154247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 16 - 550
Target Start/End: Complemental strand, 36151395 - 36150861
Alignment:
| Q |
16 |
cattgactgctccggtagccatacttacttgagtgccaccataagtagtgacgttcagttgaagcctagcatcatcaccggcttgtgtttgaacagggtt |
115 |
Q |
| |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151395 |
cattgactgctccggtagccatactaacttgactgccaccataagtagtgacgttcagttgaagcctagcatcatcaccggcttgtgtttgaacagggtt |
36151296 |
T |
|
| Q |
116 |
ggttaaggtatcgaagtttgaaatagaaacgaatgaagcaagggagtgaaactgtaagagttcgactttttgtctatcagtgagggagttgaggaaccct |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151295 |
ggttaaggtatcgaagtttgaaatagaaacgaatgaagcaagggagtgaaactgtaagagttcgactttttgtctatcagtgagggagttgaggaaccct |
36151196 |
T |
|
| Q |
216 |
gctttgagtttggagaatgaagaatcttctggcgcaaaaatggttaacccaccggaacctgatggcgatgataccagctgcgagttgagttgattgatta |
315 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151195 |
gctttgagtttggagaatgcagaatcttctggtgcaaaaatggttaacccaccggaacctgatggcgatgataccagctgcgagttgagttgattgatta |
36151096 |
T |
|
| Q |
316 |
attgtgttgttttgagaagacggattagaacggagaaccttttggctttttgaagaatgttgattatgtcaatggtgggtccttttgggattgttatggt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36151095 |
attgtgttgttttgagaagacggattagaacggagaaccttttggctttttgaagaatgttgattatgtcaatggtgggtccttttgggactgttatggt |
36150996 |
T |
|
| Q |
416 |
gggtgatggtgctccagttggtgttgttggaacaagcggaactgtacttaatcctggtgatggtgctgttgctgttgttgctggtaatggtggtgatgct |
515 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
36150995 |
gggtgatggtgcaccagctggtgttgttggaacaagtggaactgtgcttaatcctggtgatggcgctgttgctgttgttgctggtaatggtgttgatgct |
36150896 |
T |
|
| Q |
516 |
gttgttgatggtaagggtggtgagggtgatgatgt |
550 |
Q |
| |
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||||||||||||||||||||||| || |||||||| |
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| T |
36150895 |
gttgttgatggtaagggtggtgatggagatgatgt |
36150861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 87 - 366
Target Start/End: Complemental strand, 5273832 - 5273544
Alignment:
| Q |
87 |
tcatcaccggcttgtgtttgaacagggttggttaaggtatcgaagtttgaaatagaaacgaatgaagcaagggagtgaaactgtaagagttcgacttttt |
186 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||| || || || | |||||| | ||| | ||| || ||||| ||||| ||||| | |
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| T |
5273832 |
tcatcaccggcttgtgtttgaaccgggttggttaaggtgtcgaagttcgagattgagatgaatgaggaaagtgtgtggaattgtaacagttctactttgt |
5273733 |
T |
|
| Q |
187 |
gtctatcagtgagggagttgaggaaccctgctttgagtttggagaatgaagaatcttctggcgcaaaaatggttaacccacc------ggaacctgatgg |
280 |
Q |
| |
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|||| ||| ||||||| || ||||| |||| ||||||||| || || | | |||||||| ||||||| |||||| ||||| ||| |||||| |
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| T |
5273732 |
gtctgtcactgagggaattaaggaaacctggtttgagttttgaaaaggcattgtcttctggtgcaaaaagggttaagccaccactgctagaatctgatga |
5273633 |
T |
|
| Q |
281 |
cgatgat---accagctgcgagttgagttgattgattaattgtgttgttttgagaagacggattagaacggagaaccttttggcttttt |
366 |
Q |
| |
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|||||| || || || ||||||||||| || ||||| || ||||||||||||||||| || ||||| ||||| ||||| ||||||| |
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| T |
5273632 |
tgatgatgtaactagttgtgagttgagttggtttattaactgagttgttttgagaagacgaatgagaactgagaatctttttgcttttt |
5273544 |
T |
|
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