View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3828_low_21 (Length: 268)
Name: NF3828_low_21
Description: NF3828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3828_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 2385427 - 2385676
Alignment:
| Q |
1 |
tttgctgttattgccaacctatttttccatttttgcaccaatatggattgaattctgcagaaaatgaagcttgaacatgttagtggaaatattaagaatg |
100 |
Q |
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| T |
2385427 |
tttgctgttattgcccacctatttttccatttttgcactaatatggaatgaattctgcagaaaatgaagcttgaacatgttagtggaaatattaagaatg |
2385526 |
T |
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| Q |
101 |
tggcccctaatttttgtgactttaatacttcaattggtacttggataatgagatagggaatcattagtcatactggacgagtgggtggagctttcgacca |
200 |
Q |
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| T |
2385527 |
tggcccctaatttttgtgactttaatacttcaattggtacttggataatgagatagggaatcattagtcatactgtacgagtgggtggagctttcgacca |
2385626 |
T |
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| Q |
201 |
acttgagtttggacactaaagtgcggaaatgtcctagagaatgaggtttt |
250 |
Q |
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| T |
2385627 |
acttgagtttggacactaaagtgcggaaatgtcctagagaatgaggtttt |
2385676 |
T |
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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 17407826 - 17407897
Alignment:
| Q |
178 |
cgagtgggtggagctttcgaccaacttgagtttggacactaaagtgcggaaatgtcctagagaatgaggtttt |
250 |
Q |
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| T |
17407826 |
cgagtggatggagctt-caatcaacttgagtttggacactaaagtgcggaaatgttctggagaatgaggtttt |
17407897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 16505094 - 16505041
Alignment:
| Q |
197 |
accaacttgagtttggacactaaagtgcggaaatgtcctagagaatgaggtttt |
250 |
Q |
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| T |
16505094 |
accaacttgagtttggaaactaaagtgcggaaacgtcctggagaatgaggtttt |
16505041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 29993059 - 29992990
Alignment:
| Q |
180 |
agtgggtggagctttcgaccaacttgagtttggacactaaagtgcggaaatgtcctagagaatgaggtttt |
250 |
Q |
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| T |
29993059 |
agtgggtggagctt-caatcaacttgagttttaacactgaggtgcggaaacgtcctggagaatgaggtttt |
29992990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 53015100 - 53015169
Alignment:
| Q |
180 |
agtgggtggagctttcgaccaacttgagtttggacactaaagtgcggaaatgtcctagagaatgaggtttt |
250 |
Q |
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| T |
53015100 |
agtgggcggagctt-caaccaacttgagtttgaaaactaaagtgcggaagcgtcctggacaatgaggtttt |
53015169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 3057930 - 3057881
Alignment:
| Q |
200 |
aacttgagtttggacactaaagtgcggaaatgtcctagagaatgaggttt |
249 |
Q |
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| T |
3057930 |
aacttgagtttgaaaactaaagtgcggaaacgtcctggagaatggggttt |
3057881 |
T |
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