View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3828_low_23 (Length: 258)

Name: NF3828_low_23
Description: NF3828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3828_low_23
NF3828_low_23
[»] chr1 (6 HSPs)
chr1 (1-117)||(51192665-51192780)
chr1 (119-248)||(51192478-51192607)
chr1 (44-111)||(9239491-9239558)
chr1 (1-111)||(48651646-48651760)
chr1 (1-96)||(41002124-41002214)
chr1 (112-155)||(51192608-51192651)
[»] chr4 (2 HSPs)
chr4 (1-111)||(523320-523427)
chr4 (1-111)||(5788017-5788124)
[»] chr8 (2 HSPs)
chr8 (1-111)||(28155280-28155387)
chr8 (5-111)||(44557972-44558075)
[»] chr7 (2 HSPs)
chr7 (5-111)||(37207412-37207515)
chr7 (4-74)||(7345124-7345191)
[»] chr2 (1 HSPs)
chr2 (1-80)||(18485173-18485249)
[»] chr5 (1 HSPs)
chr5 (4-91)||(19555230-19555315)
[»] chr3 (2 HSPs)
chr3 (1-77)||(29077365-29077438)
chr3 (66-109)||(29076822-29076865)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 51192780 - 51192665
Alignment:
Q  1 tcattctttccttccactttctattcactttcttttatactatcaaacaaccacaaaaatcttcttactttccactatcattctttccttatacttccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51192780 tcattctttccttccactttctattcactttcttttatactaccaaacaaccacaaaaatcttcttactttccactatcattctttccttatacttccat 51192681  T
Q  101 tcctttcacttaaacat 117  Q
    ||||||| |||||||||    
T  51192680 tcctttc-cttaaacat 51192665  T

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Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 119 - 248
Target Start/End: Complemental strand, 51192607 - 51192478
Alignment:
Q  119 cccttagagacgatagaaaaagactttaaaatggggttgtcacccaggaagattttgaagatgcacccccaaatcccatatgataacgtcactgttagag 218  Q
    ||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||    
T  51192607 cccttagtgatgatagaaagagactttaaaatggggttgtcacccaggaagattttgaagatgcacccccaattcccatatgataccgtcattgttagag 51192508  T
Q  219 actcggaaatttctctcaattcattctctg 248  Q
    ||||| ||||||||||||||||||||||||    
T  51192507 actcgaaaatttctctcaattcattctctg 51192478  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 9239491 - 9239558
Alignment:
Q  44 caaacaaccacaaaaatcttcttactttccactatcattctttccttatacttccattcctttcactt 111  Q
    |||||||||| || |||||||| |||||  ||||||||||||||||||||||| ||||||||||||||    
T  9239491 caaacaaccaaaataatcttctcactttttactatcattctttccttatactttcattcctttcactt 9239558  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 48651760 - 48651646
Alignment:
Q  1 tcattctttccttccactttctattcactttcttttatactatcaaacaaccacaaaaatcttct-------tactttccactatcattctttccttata 93  Q
    |||||||||||||||||||| |||||||||||| ||||||   ||||||| || ||| |||||||       || |||| |||||||||||| |||||||    
T  48651760 tcattctttccttccactttttattcactttctcttatac---caaacaatcaaaaatatcttctcactttctagtttctactatcattcttcccttata 48651664  T
Q  94 cttccattcctttcactt 111  Q
    ||| ||||||||||||||    
T  48651663 ctttcattcctttcactt 48651646  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 41002214 - 41002124
Alignment:
Q  1 tcattctttccttccactttctattcactttcttttatactatcaaacaaccacaaaaatcttcttactttccactatcattctttccttatactt 96  Q
    ||||||||||||||||||||||||||||| ||||  ||||   |||||||| | ||  ||||||| |||||| |||||||||||||||||| ||||    
T  41002214 tcattctttccttccactttctattcactctctt--atac---caaacaactaaaaggatcttctcactttctactatcattctttccttaaactt 41002124  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 51192651 - 51192608
Alignment:
Q  112 aaacatacccttagagacgatagaaaaagactttaaaatggggt 155  Q
    ||||||||||||||| |||||||||| |||||||||||||||||    
T  51192651 aaacatacccttagaaacgatagaaagagactttaaaatggggt 51192608  T

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Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 523427 - 523320
Alignment:
Q  1 tcattctttccttccactttctattcactttcttttatactatcaaacaaccacaaaaatcttcttactttccactatcattctttccttatacttccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  523427 tcattctttccttccactttctattcactttcttttatac---caaacaaccacaaaaatcttcttactttccactatcattttttccttatactttcat 523331  T
Q  101 tcctttcactt 111  Q
    |||||||||||    
T  523330 tcctttcactt 523320  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 5788124 - 5788017
Alignment:
Q  1 tcattctttccttccactttctattcactttcttttatactatcaaacaaccacaaaaatcttcttactttccactatcattctttccttatacttccat 100  Q
    ||||||||||||||||||||||||||||| |||||| |||   |||||| | | ||| ||||||| |||||| ||||||||||||||||||||||| |||    
T  5788124 tcattctttccttccactttctattcactctcttttgtac---caaacacctaaaaagatcttctcactttctactatcattctttccttatactttcat 5788028  T
Q  101 tcctttcactt 111  Q
    |||||| ||||    
T  5788027 tcctttaactt 5788017  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 28155280 - 28155387
Alignment:
Q  1 tcattctttccttccactttctattcactttcttttatactatcaaacaaccacaaaaatcttcttactttccactatcattctttccttatacttccat 100  Q
    |||||||||| |||||||||||||||||||||| ||||||   |||||||| | ||| ||||||| |||||| ||||||||||||||||||||||| |||    
T  28155280 tcattctttcgttccactttctattcactttctcttatac---caaacaactaaaaagatcttctcactttctactatcattctttccttatactttcat 28155376  T
Q  101 tcctttcactt 111  Q
    |||||| ||||    
T  28155377 tccttttactt 28155387  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 44558075 - 44557972
Alignment:
Q  5 tctttccttccactttctattcactttcttttatactatcaaacaaccacaaaaatcttcttactttccactatcattctttccttatacttccattcct 104  Q
    ||||||||| ||||||||||| ||||||| ||||||   |||||||| | ||| || |||| |||||| |||||||||||||||||||| || |||||||    
T  44558075 tctttcctttcactttctatttactttctcttatac---caaacaactaaaaagattttctcactttctactatcattctttccttatattttcattcct 44557979  T
Q  105 ttcactt 111  Q
    |||||||    
T  44557978 ttcactt 44557972  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 37207412 - 37207515
Alignment:
Q  5 tctttccttccactttctattcactttcttttatactatcaaacaaccacaaaaatcttcttactttccactatcattctttccttatacttccattcct 104  Q
    ||||| ||| ||||||||||||||||||| ||||||   |||||||| | ||| ||| ||| |||||| |||||||||||||| |||||||| |||||||    
T  37207412 tcttttctttcactttctattcactttctcttatac---caaacaactaaaaagatcgtctcactttctactatcattctttctttatactttcattcct 37207508  T
Q  105 ttcactt 111  Q
    |||||||    
T  37207509 ttcactt 37207515  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 7345124 - 7345191
Alignment:
Q  4 ttctttccttccactttctattcactttcttttatactatcaaacaaccacaaaaatcttcttactttcca 74  Q
    |||||||||||||||||||  ||| |||| |||||||   |||||||||| || |||| ||||||||||||    
T  7345124 ttctttccttccactttcttatcattttcatttatac---caaacaaccaaaataatcatcttactttcca 7345191  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 18485173 - 18485249
Alignment:
Q  1 tcattctttccttccactttctattcactttcttttatactatcaaacaaccacaaaaatcttcttactttccactatca 80  Q
    ||||||||| ||||||||||||||||||||||| ||||||   |||||||||| ||| ||||||| |||||| |||||||    
T  18485173 tcattcttttcttccactttctattcactttctcttatac---caaacaaccaaaaagatcttctcactttctactatca 18485249  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 19555230 - 19555315
Alignment:
Q  4 ttctttccttccactttctattc-actttcttttatactatcaaacaaccacaaaaatcttcttactttccactatcattctttcctta 91  Q
    ||||||||||| ||||||||||| ||||||||||||||   |||||||||| || ||||||||||||||| ||| |  |||||||||||    
T  19555230 ttctttccttcaactttctattccactttcttttatac---caaacaaccaaaacaatcttcttactttctactctttttctttcctta 19555315  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 29077438 - 29077365
Alignment:
Q  1 tcattctttccttccactttctattcactttcttttatactatcaaacaaccacaaaaatcttcttactttccacta 77  Q
    ||||||||||||||||||||||||||||||||| ||||||   |||||||||| ||  ||||||| |||||| ||||    
T  29077438 tcattctttccttccactttctattcactttctcttatac---caaacaaccaaaaggatcttctcactttctacta 29077365  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 29076865 - 29076822
Alignment:
Q  66 tactttccactatcattctttccttatacttccattcctttcac 109  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||    
T  29076865 tactttctactatcattctttccttatactttcattcctttcac 29076822  T

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