View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3828_low_4 (Length: 460)

Name: NF3828_low_4
Description: NF3828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3828_low_4
NF3828_low_4
[»] chr3 (10 HSPs)
chr3 (19-154)||(22454880-22455015)
chr3 (19-154)||(22473436-22473571)
chr3 (244-344)||(22454690-22454791)
chr3 (342-416)||(22454152-22454226)
chr3 (358-420)||(17652441-17652502)
chr3 (358-420)||(21296204-21296265)
chr3 (408-446)||(22451933-22451971)
chr3 (362-428)||(16152600-16152665)
chr3 (358-420)||(46824075-46824136)
chr3 (359-428)||(38171832-38171900)
[»] scaffold0319 (1 HSPs)
scaffold0319 (358-420)||(12941-13002)
[»] chr8 (4 HSPs)
chr8 (358-420)||(4072053-4072114)
chr8 (358-420)||(41322995-41323056)
chr8 (358-425)||(18882205-18882271)
chr8 (358-420)||(21441403-21441464)
[»] chr7 (4 HSPs)
chr7 (358-420)||(39720153-39720214)
chr7 (358-420)||(46211280-46211341)
chr7 (362-420)||(83099-83156)
chr7 (358-420)||(759468-759529)
[»] chr6 (1 HSPs)
chr6 (358-420)||(29363008-29363069)
[»] chr4 (2 HSPs)
chr4 (358-420)||(43892334-43892395)
chr4 (362-428)||(48862296-48862361)
[»] chr5 (3 HSPs)
chr5 (358-417)||(13517773-13517831)
chr5 (362-420)||(17768794-17768851)
chr5 (360-428)||(7009233-7009300)
[»] chr2 (1 HSPs)
chr2 (358-420)||(7495187-7495248)
[»] chr1 (4 HSPs)
chr1 (362-420)||(10620327-10620384)
chr1 (362-420)||(15757944-15758001)
chr1 (362-428)||(23614938-23615003)
chr1 (360-428)||(1600166-1600233)


Alignment Details
Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 22455015 - 22454880
Alignment:
Q  19 caaataaagatatgaaagaattaccactttcatggtctctaatggcctcaatctctctattgatctcagataactcaatgctcattcctccatatatatc 118  Q
    ||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22455015 caaataaagatatgaaagaatcaccacttttatagtctctaatggcctcaatctctctattgatctcagataactctatgctcattcctccatatatatc 22454916  T
Q  119 attgaacacaaatttacaaatccttctgcataatag 154  Q
    ||||||||||||||||||||||||||||||||||||    
T  22454915 attgaacacaaatttacaaatccttctgcataatag 22454880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 22473571 - 22473436
Alignment:
Q  19 caaataaagatatgaaagaattaccactttcatggtctctaatggcctcaatctctctattgatctcagataactcaatgctcattcctccatatatatc 118  Q
    ||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22473571 caaataaagatatgaaagaatcaccacttttatagtctctaatggcctcaatctctctattgatctcagataactctatgctcattcctccatatatatc 22473472  T
Q  119 attgaacacaaatttacaaatccttctgcataatag 154  Q
    |||||| |||||||||||||||||||||||||||||    
T  22473471 attgaaaacaaatttacaaatccttctgcataatag 22473436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 22454791 - 22454690
Alignment:
Q  244 ggatgagataaatcaacggaagaatttttcaacccttcaata-tgcgctacgccaacatccagtttcttaccattaacaacttctaaccataattttttc 342  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22454791 ggatgagataaatcaacggaagaatttttcaacccttcaataatgcgctacgccaacatccagtttcttaccattaacaacttctaaccataattttttc 22454692  T
Q  343 tt 344  Q
    ||    
T  22454691 tt 22454690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 342 - 416
Target Start/End: Complemental strand, 22454226 - 22454152
Alignment:
Q  342 cttgctataagattgcttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22454226 cttgctataagattgcttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat 22454152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 17652441 - 17652502
Alignment:
Q  358 ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataatt 420  Q
    ||||||||| |||||||||||||||||  |  ||||||||||||| |||||||||||||||||    
T  17652441 ttttaaaacaaacatattaaatttaaggataaaatatatttttag-tcctataaattataatt 17652502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 420
Target Start/End: Complemental strand, 21296265 - 21296204
Alignment:
Q  358 ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataatt 420  Q
    ||||||||| |||||||||||||||||  |  ||||||||||||| |||||||||||||||||    
T  21296265 ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattataatt 21296204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 446
Target Start/End: Complemental strand, 22451971 - 22451933
Alignment:
Q  408 ataaattataattctttaggtgtaatcgctataaaaatt 446  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  22451971 ataaattataattctttaggtgtaattgctataaaaatt 22451933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 428
Target Start/End: Complemental strand, 16152665 - 16152600
Alignment:
Q  362 aaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataattctttaggt 428  Q
    ||||| |||||||||||||||||  |  ||||||||||||| ||| ||||||||||||| |||||||    
T  16152665 aaaacaaacatattaaatttaaggataaaatatatttttag-tcccataaattataattttttaggt 16152600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 420
Target Start/End: Complemental strand, 46824136 - 46824075
Alignment:
Q  358 ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataatt 420  Q
    |||| |||| |||||||||||||||||  |  ||||||||||||| |||||||||||||||||    
T  46824136 tttttaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattataatt 46824075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 428
Target Start/End: Complemental strand, 38171900 - 38171832
Alignment:
Q  359 tttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataattctttaggt 428  Q
    |||||||  ||||||||||||||||   |  |||||||||||||| |||||||||||||||| |||||||    
T  38171900 tttaaaatcaacatattaaatttaaagataaaatatatttttagt-cctataaattataattttttaggt 38171832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 12941 - 13002
Alignment:
Q  358 ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataatt 420  Q
    ||||||||| |||||||||||||||||  |  ||||||||||||| |||||||||||||||||    
T  12941 ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattataatt 13002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 4072053 - 4072114
Alignment:
Q  358 ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataatt 420  Q
    ||||||||| |||||||||||||||||  |  ||||||||||||| |||||||||||||||||    
T  4072053 ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattataatt 4072114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 41322995 - 41323056
Alignment:
Q  358 ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataatt 420  Q
    ||||||||| |||||||||||||||||  |  ||||||||||||| |||||||||||||||||    
T  41322995 ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattataatt 41323056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 425
Target Start/End: Complemental strand, 18882271 - 18882205
Alignment:
Q  358 ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataattcttta 425  Q
    ||||||||| |||||||||||||||||  |  ||||||||||||| ||||||||||| ||||| ||||    
T  18882271 ttttaaaaccaacatattaaatttaaggataaaatatatttttag-tcctataaattctaatttttta 18882205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 21441403 - 21441464
Alignment:
Q  358 ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataatt 420  Q
    ||||||||| |||||||||||||||||  |  |||||||||||||  ||||||||||||||||    
T  21441403 ttttaaaacaaacatattaaatttaagaataaaatatatttttag-ccctataaattataatt 21441464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 420
Target Start/End: Complemental strand, 39720214 - 39720153
Alignment:
Q  358 ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataatt 420  Q
    ||||||||| |||||||||||||||||  |  ||||||||||||| |||||||||||||||||    
T  39720214 ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattataatt 39720153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 46211280 - 46211341
Alignment:
Q  358 ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataatt 420  Q
    ||||||||| |||||||||||||||||  |  ||||||||||||| |||||||||||||||||    
T  46211280 ttttaaaacaaacatattaaatttaaggataaaatatatttttag-tcctataaattataatt 46211341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 420
Target Start/End: Original strand, 83099 - 83156
Alignment:
Q  362 aaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataatt 420  Q
    ||||| |||||||||||||||||  |  ||||||||||||| |||||||||||||||||    
T  83099 aaaacaaacatattaaatttaaggataaaatatatttttag-tcctataaattataatt 83156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 420
Target Start/End: Complemental strand, 759529 - 759468
Alignment:
Q  358 ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataatt 420  Q
    |||| |||| |||||||||||||||||  |  ||||||||||||| |||||||||||||||||    
T  759529 tttttaaacaaacatattaaatttaaggataaaatatatttttag-tcctataaattataatt 759468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 29363008 - 29363069
Alignment:
Q  358 ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataatt 420  Q
    ||||||||| |||||||||||||||||  |  ||||||||||||| |||||||||||||||||    
T  29363008 ttttaaaacaaacatattaaatttaaggataaaatatatttttag-tcctataaattataatt 29363069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 43892334 - 43892395
Alignment:
Q  358 ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataatt 420  Q
    ||||||||| |||||||||||||||||  |  ||||||||||||| |||||||||||||||||    
T  43892334 ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattataatt 43892395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 428
Target Start/End: Complemental strand, 48862361 - 48862296
Alignment:
Q  362 aaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataattctttaggt 428  Q
    ||||| |||||||||||||||||  |  ||||||||||||| ||| ||||||||||||| |||||||    
T  48862361 aaaacaaacatattaaatttaaggataaaatatatttttag-tcccataaattataattttttaggt 48862296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 417
Target Start/End: Complemental strand, 13517831 - 13517773
Alignment:
Q  358 ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattata 417  Q
    ||||||||| |||||||||||||||||  |  ||||||||||||| ||||||||||||||    
T  13517831 ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattata 13517773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 420
Target Start/End: Original strand, 17768794 - 17768851
Alignment:
Q  362 aaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataatt 420  Q
    ||||| |||||||||||||||||  |  ||||||||||||| |||||||||||||||||    
T  17768794 aaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattataatt 17768851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 428
Target Start/End: Complemental strand, 7009300 - 7009233
Alignment:
Q  360 ttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataattctttaggt 428  Q
    ||||||| ||| |||||||||||||  |  ||||||| |||||| |||||||||||||||| |||||||    
T  7009300 ttaaaaccaacctattaaatttaaggataaaatatatctttagt-cctataaattataattttttaggt 7009233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 420
Target Start/End: Complemental strand, 7495248 - 7495187
Alignment:
Q  358 ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataatt 420  Q
    ||||||||| |||||||||||||||||  |  ||||||||||||  |||||||||||||||||    
T  7495248 ttttaaaacaaacatattaaatttaaggataaaatatattttta-atcctataaattataatt 7495187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 420
Target Start/End: Complemental strand, 10620384 - 10620327
Alignment:
Q  362 aaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataatt 420  Q
    ||||| |||||||||||||||||  |  ||||||||||||| |||||||||||||||||    
T  10620384 aaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattataatt 10620327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 420
Target Start/End: Complemental strand, 15758001 - 15757944
Alignment:
Q  362 aaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataatt 420  Q
    ||||| |||||||||||||||||  |  ||||||||||||| |||||||||||||||||    
T  15758001 aaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattataatt 15757944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 428
Target Start/End: Complemental strand, 23615003 - 23614938
Alignment:
Q  362 aaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataattctttaggt 428  Q
    ||||| |||||||||||||||||  |  ||||||||||||| ||| ||||||||||||| |||||||    
T  23615003 aaaacaaacatattaaatttaaggataaaatatatttttag-tcccataaattataattttttaggt 23614938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 428
Target Start/End: Original strand, 1600166 - 1600233
Alignment:
Q  360 ttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattataattctttaggt 428  Q
    ||||||| |||||||||||||||||  |  ||||||| ||||| ||| ||||||||||||| |||||||    
T  1600166 ttaaaacaaacatattaaatttaaggataaaatatatatttag-tcccataaattataattttttaggt 1600233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University