View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3828_low_7 (Length: 429)
Name: NF3828_low_7
Description: NF3828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3828_low_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 429
Target Start/End: Complemental strand, 46588189 - 46587775
Alignment:
| Q |
16 |
tctaggta-cacaaaccacaataaaaaacataannnnnnnnctttcgatacttcaggaaagaaaaaacagattgaaaccatccattttatttatatattg |
114 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
46588189 |
tctaggtagcacaaaccacaataaaaaacataattttttttctttcgatactccaggaaagaaaaaacagatggaaaccatccattttatttatattttg |
46588090 |
T |
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| Q |
115 |
aattcaactaccttaaaaggaaaaaacttgattcaattgggccatgagggctaaattaaaaggaacgtgtagatggaacagcaatgaacttggtgagtcc |
214 |
Q |
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| T |
46588089 |
aattcaactaccttaaaaggaaataacttgattcaattgggccatgagggttaaattaaaaggaacgtgtagatggaacagcaatgaacttggtgagtcc |
46587990 |
T |
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| Q |
215 |
agcaatacagtcataggcattaccttcatcagaggcaaagtaataaggcttcaactgattcagctcaatctttatcccctcaccaccaccttgttcagca |
314 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46587989 |
agcaatacagtcataggcattgccttcatcagaggcaaagtaataaggcttcaattgattcagctcaatctttatcccctcaccaccaccttgatcagca |
46587890 |
T |
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| Q |
315 |
ctaccaagcaactttgctcctctaaattcacacgtcgtgtaactccacatattcggtagcaagtaaacgctgggaacaaccgtggaatttcctgtagggg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46587889 |
ctaccaagcaactttgctcctctaaattcacacgtcgtgtaactccacatattcggtagcaagtaaacgctgggaacaaccgtggaatttcctgtagggg |
46587790 |
T |
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| Q |
415 |
gatacttgaacactg |
429 |
Q |
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| T |
46587789 |
gatacttgaacactg |
46587775 |
T |
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