View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3828_low_8 (Length: 425)
Name: NF3828_low_8
Description: NF3828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3828_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Complemental strand, 7542513 - 7542119
Alignment:
| Q |
19 |
attttgccatcttaatgtcacattacttcccatgtttgaaaacatttcttcaggtataggtatttcaagaacagtttccaatccatcttctttgtctatg |
118 |
Q |
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| T |
7542513 |
attttgccatcttaatgtcacattacttcccatgtttgaaaacatttcttcaggtataggtatttcaagaacagtttccaatccatcttctttgtctatg |
7542414 |
T |
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| Q |
119 |
tttggacataacctccttaatgatgattttgcagcaggttgtttcatttgattagtgtgagattgagacaagtgaagaatttgatgagagaaaattaagg |
218 |
Q |
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| T |
7542413 |
tttggacataacctccttaatgatgattttgcagcaggttgtttcatttgattagtgtgagattgagacaagtgaagaatttgatgagagaaaattaagg |
7542314 |
T |
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| Q |
219 |
aagagggttatagtcaaaaggctaaatcatctttaattaatgtatgaacattgagaaggtgatgttaattagaaggttgtccttgtttataggtgttgta |
318 |
Q |
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| T |
7542313 |
aagagggttatagtcaaaaggctaaatcatctttaattaatgtatgaacattgagaaggtgatgttaattagaaggttgtccttgtttataggtgttgta |
7542214 |
T |
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| Q |
319 |
tgggcacaaattatggtttgttatgtttgattgttttttgcttaagtttctatttaaagatttaatccatgatttttgcttatagctagtagtat |
413 |
Q |
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| T |
7542213 |
tgggcacaaattatggtttgttgtgtttgattgttttttgcttaagtttctatttaaagatttaatccatgatttttgcttatagctcgtagtat |
7542119 |
T |
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