View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3828_low_9 (Length: 407)
Name: NF3828_low_9
Description: NF3828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3828_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 7328492 - 7328093
Alignment:
| Q |
1 |
tcatgcagcacgggtcaattcaacctcataagcttttgcatatcgaaagctagaaaagaaagaaacagaaacattggcaagtttttaagactcaaatttg |
100 |
Q |
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| T |
7328492 |
tcatgcagcaccggtcaattcaacctcataagcttttgcatatcgaaggctagaaaagaaagacacagcaacgttggcaagtttttaagactcaaatttg |
7328393 |
T |
|
| Q |
101 |
gttctagtaccggaaaagcattcaaaaagagagcagcaaagtgtgctcttgctaaaataattacaggtgcttggctttcctatcagaagtacaagcacac |
200 |
Q |
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| T |
7328392 |
gttctagtactggaaaagcattcaaaaagagagcagcaaagtgtgctcttgctaaaataattacaggtgcttggctgtcctatcagaagtacaagcacac |
7328293 |
T |
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| Q |
201 |
gaatacgaagaaagtcgaaggtaatagaaatat---atttagttagagtttgttagtaggtagttagtttagcgattctcatgtgag---atttaccg-- |
292 |
Q |
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| T |
7328292 |
aaatacaaagaccgtcgaaggtaatagaaatatagaagttagttagagtttgttggtaggtagttagtttatcgattctctaaaaagaccattgaaggta |
7328193 |
T |
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| Q |
293 |
-atcttctgactaacttttatattgctattacaggcgatctgaaggaaataatctttgaagactttgtggataaaataaaagaagggataaacatgggag |
391 |
Q |
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| T |
7328192 |
atttttctgactaacttttacattgctattacagatgatctgaaggaaataatctttgaagactttgtggataaaataaaagaggggataaacatgggag |
7328093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 6806292 - 6806105
Alignment:
| Q |
13 |
ggtcaattcaacctcataagcttttgcatatcgaaagctagaaaagaaagaaacagaaacattggcaagtttttaagactcaaatttggttctagtaccg |
112 |
Q |
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| T |
6806292 |
ggtcaattcaacctcatgagcttttgcttattgaaagctagaaaaaaaagacacggcaaacttggcaagcttttaaggcacaaatttggtttgaattggg |
6806193 |
T |
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| Q |
113 |
gaaaagcattcaaaaagagagcagcaaagtgtgctcttgctaaaataattacaggtgcttggctttcctatcagaagtacaagcacac |
200 |
Q |
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| T |
6806192 |
ggaaaacattcaaaaagaaagcagaaaagtgttgtgttgttcaagtgattacagatgtttggctatcctatcagaagtacaagcacac |
6806105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 301 - 371
Target Start/End: Complemental strand, 6806023 - 6805952
Alignment:
| Q |
301 |
actaacttttatattgctatta-caggcgatctgaaggaaataatctttgaagactttgtggataaaataaa |
371 |
Q |
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| T |
6806023 |
actaacttttatatttctattaacaggcgatctaaaggaaataatctttgaacactttgtgagtaaaataaa |
6805952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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