View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3829_low_2 (Length: 329)
Name: NF3829_low_2
Description: NF3829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3829_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 37981389 - 37981475
Alignment:
| Q |
2 |
atacctttgaattatagtttcttttaattccatgatgatatgctcttaacaaaagtagcagttttcttctcttctccttccaactga |
88 |
Q |
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| T |
37981389 |
atacctttgaattatagtttcttttaattccatgatgatatgctcttaacaaaagtagcagttttcttctcttctccttccaactga |
37981475 |
T |
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Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 37981508 - 37981590
Alignment:
| Q |
121 |
ccggctaaagatttaaatgactacacgtgcccaatatcctttagccgactcattcatagggctttctaccacctacacgttgc |
203 |
Q |
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| T |
37981508 |
ccggctaaagagttaaatgactacacgtgcccaatatcctttagccgactcattcatagggttttctacaacctacacgttgc |
37981590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 37981686 - 37981725
Alignment:
| Q |
265 |
gtagtataatacatctggctctctatctatcttgtgtaggg |
305 |
Q |
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| T |
37981686 |
gtagtataatacatctggctctctatctatc-tgtgtaggg |
37981725 |
T |
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