View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3829_low_3 (Length: 291)
Name: NF3829_low_3
Description: NF3829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3829_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 5963579 - 5963391
Alignment:
| Q |
19 |
ccacgtgttcgtagtccccttgagttttaactcaatcaaaaaattgatgcttttgacaacaatggttggtggttagggcaaatcacaggtgagaagatca |
118 |
Q |
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| T |
5963579 |
ccacgtgttcgtagtcctcgtgagtttcaactcaatcaaaaagttgatgcttttgacaacgatggttggtggttagggcaaatcactagtgagaagatca |
5963480 |
T |
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| Q |
119 |
tcacggaagaaggtcattactataaggtgtatttcgacactacatatgagacgatttgctacccttgtgatcggatccgagttcatcac |
207 |
Q |
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| T |
5963479 |
tcacggaagaaggtcattactataaggtgtatttcgacactacatatgagacgatttgctatccttgtgatcggatccgagttcatcac |
5963391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 279
Target Start/End: Complemental strand, 5963395 - 5963365
Alignment:
| Q |
249 |
atcacaatcatgattattaatcaaaacttct |
279 |
Q |
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| T |
5963395 |
atcacaatcatgattattaatcaaaacttct |
5963365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 30897474 - 30897695
Alignment:
| Q |
15 |
accaccacgtgttcgtagtccccttgagttttaactcaatcaaaaaattgatgcttttgacaacaatggttggtggttagggcaaatcacaggtgagaag |
114 |
Q |
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| T |
30897474 |
accaccacgtgttcgtaatcctcatgaatttcaactcaatcagaaagttgatgctttccataatgatggttggtgggtagggcaaatcaccagtgagaag |
30897573 |
T |
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| Q |
115 |
atcatcacgg---aagaaggtcattactataaggtgtatttcgacactacatatgagacgatttgctacccttgtgatcggatccgagttcatcacgatt |
211 |
Q |
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| T |
30897574 |
atcatcactgctgaagagggccattgctattgggtgtatttcagcactagctcagagacgaattactaccgctatgatcagatcagagttcatcatgagt |
30897673 |
T |
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| Q |
212 |
ggtttgacggagagtggatctt |
233 |
Q |
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|||||| |||||||||||||| |
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| T |
30897674 |
ggtttggtggagagtggatctt |
30897695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 38782660 - 38782740
Alignment:
| Q |
15 |
accaccacgtgttcgtagtccccttgagttttaactcaatcaaaaaattgatgcttttgacaacaatggttggtggttagg |
95 |
Q |
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| T |
38782660 |
accaccacatgttcgtaatcctttgaagtttaaactcaatcaaaaagttgatgtatttgataacgatggttggtgggtagg |
38782740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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